View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_1D_low_40 (Length: 215)

Name: NF8324_1D_low_40
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_1D_low_40
NF8324_1D_low_40
[»] chr5 (1 HSPs)
chr5 (19-199)||(26799138-26799325)
[»] chr3 (4 HSPs)
chr3 (19-199)||(10219667-10219854)
chr3 (24-64)||(10125543-10125583)
chr3 (24-64)||(10182888-10182928)
chr3 (24-64)||(10259337-10259377)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 26799325 - 26799138
Alignment:
Q  19 aatgtagactcaagaaaactcacatgtgaatgaatagtaatagtaacaactgatctat-------ggacatttccagcattagacgtgttacaccgacac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       || ||||||  | |||||  |||||||||||||||    
T  26799325 aatgtagactcaagaaaactcacatgtgaatgaatagtaatagtaacaattgatctatgaagcacgggcatttcttgtattaggtgtgttacaccgacac 26799226  T
Q  112 ttataaatagtaattacattgaattatattannnnnnncaaactattaactgtgtcgacgtgtcagtatccgtgttgtgtttgatgtc 199  Q
    || ||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  26799225 ttgtaaatagtaattacattgaattatattattttttttaaactattaactgtgtcgacgtatcagtatctgtgtcgtgtttgatgtc 26799138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 10219854 - 10219667
Alignment:
Q  19 aatgtagactcaagaaaactcacatgtgaatgaatagtaatagtaacaactgatctat-------ggacatttccagcattagacgtgttacaccgacac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       || ||||||  | |||||  |||||||||||||||    
T  10219854 aatgtagactcaagaaaactcacatgtgaatgaatagtaatagtaacaattgatctatgaagcacgggcatttcttgtattaggtgtgttacaccgacac 10219755  T
Q  112 ttataaatagtaattacattgaattatattannnnnnncaaactattaactgtgtcgacgtgtcagtatccgtgttgtgtttgatgtc 199  Q
    || ||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  10219754 ttgtaaatagtaattacattgaattatattattttttttaaactattaactgtgtcgacgtatcagtatctgtgtcgtgtttgatgtc 10219667  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 10125583 - 10125543
Alignment:
Q  24 agactcaagaaaactcacatgtgaatgaatagtaatagtaa 64  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  10125583 agactcaataaaactcacatgtgaatgaatagtaatagtaa 10125543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 10182928 - 10182888
Alignment:
Q  24 agactcaagaaaactcacatgtgaatgaatagtaatagtaa 64  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  10182928 agactcaataaaactcacatgtgaatgaatagtaatagtaa 10182888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 10259377 - 10259337
Alignment:
Q  24 agactcaagaaaactcacatgtgaatgaatagtaatagtaa 64  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  10259377 agactcaataaaactcacatgtgaatgagtagtaatagtaa 10259337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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