View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8324_1D_low_42 (Length: 211)
Name: NF8324_1D_low_42
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 51116662 - 51116843
Alignment:
| Q |
4 |
gaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaagcatgaggaaggtgggtgtaacatctgtaaaattggaatgac |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51116662 |
gaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaagcatgaggaaggtgggtgtaacatctgtaaaattggaatgac |
51116761 |
T |
|
| Q |
104 |
gctgttttcaacgtagactttccgattcggtgcaaaaacgccattaattacctcaactgaagttagtgttagtgttagtgtt |
185 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51116762 |
gctgttttcaaagtagactttccgattctgtgcaaaaacgccattaattacttcaactgaagttagtgttagtgttagtgtt |
51116843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 51109099 - 51109156
Alignment:
| Q |
4 |
gaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaa |
61 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| | |||| ||||| |
|
|
| T |
51109099 |
gaaaagcgaatgcgaatatggcataacagtagggagagttttaggttcgggaatagaa |
51109156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University