View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_43 (Length: 211)
Name: NF8324_1D_low_43
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 22858597 - 22858416
Alignment:
| Q |
7 |
atgaaacaaaccggcaacaactatttgaatcgtaacagtaactggaacgtagcgtgttaaatttgacggaaacataaacgaaaaaaggttcgttcccgaa |
106 |
Q |
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| T |
22858597 |
atgaaacaaaccggcaacaactatttgaatcgtaacagtaactggaacgtagcgtgttaaatttgacggaaacataaacgaaaaaaggttcgttcccgaa |
22858498 |
T |
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| Q |
107 |
ctcggaat---cttccttcttcagcgttaccatcatctctttcttctcttcaagccaagaatatttgtagcacactccaatt |
185 |
Q |
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| T |
22858497 |
ctcggaatcttcttccttcttcggcgtcaccatcatcgctttcttctcttcaagccaagaatatttgtagcacactccaatt |
22858416 |
T |
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