View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_1D_low_46 (Length: 205)

Name: NF8324_1D_low_46
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_1D_low_46
NF8324_1D_low_46
[»] chr1 (7 HSPs)
chr1 (1-137)||(38280906-38281041)
chr1 (29-104)||(51726779-51726854)
chr1 (29-107)||(21277097-21277175)
chr1 (29-96)||(2972943-2973010)
chr1 (62-104)||(52742944-52742986)
chr1 (62-107)||(9633878-9633923)
chr1 (59-96)||(14169733-14169770)
[»] chr7 (8 HSPs)
chr7 (1-108)||(131906-132013)
chr7 (1-96)||(28325186-28325281)
chr7 (5-96)||(33459454-33459545)
chr7 (47-101)||(25154889-25154943)
chr7 (47-101)||(26406234-26406288)
chr7 (1-104)||(46458620-46458723)
chr7 (60-104)||(13286960-13287004)
chr7 (59-99)||(27899179-27899219)
[»] chr4 (7 HSPs)
chr4 (29-103)||(11114915-11114989)
chr4 (1-99)||(38555183-38555281)
chr4 (5-91)||(40144655-40144741)
chr4 (44-107)||(15787055-15787119)
chr4 (1-98)||(17319154-17319251)
chr4 (62-101)||(38418985-38419024)
chr4 (59-99)||(6140325-6140365)
[»] chr2 (9 HSPs)
chr2 (1-104)||(35799618-35799721)
chr2 (1-101)||(8537121-8537221)
chr2 (47-104)||(28109822-28109879)
chr2 (1-101)||(10367348-10367448)
chr2 (29-107)||(12959640-12959718)
chr2 (29-104)||(14509315-14509390)
chr2 (29-104)||(25570805-25570880)
chr2 (1-101)||(37868947-37869047)
chr2 (50-99)||(7490151-7490200)
[»] chr8 (9 HSPs)
chr8 (4-104)||(8395101-8395201)
chr8 (29-104)||(13366985-13367060)
chr8 (1-107)||(44606242-44606348)
chr8 (29-104)||(19913598-19913673)
chr8 (62-101)||(39546645-39546684)
chr8 (59-101)||(35944017-35944059)
chr8 (59-96)||(2421258-2421295)
chr8 (59-104)||(8095452-8095497)
chr8 (59-104)||(16363777-16363822)
[»] chr3 (5 HSPs)
chr3 (29-96)||(48867365-48867432)
chr3 (59-104)||(23559925-23559970)
chr3 (29-104)||(26798841-26798916)
chr3 (29-90)||(5123278-5123339)
chr3 (59-95)||(12062349-12062385)
[»] chr5 (5 HSPs)
chr5 (1-104)||(223332-223435)
chr5 (30-102)||(38471397-38471469)
chr5 (29-107)||(5383045-5383123)
chr5 (29-101)||(40058127-40058199)
chr5 (59-102)||(2167480-2167523)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-104)||(1317-1418)
[»] scaffold0122 (1 HSPs)
scaffold0122 (59-104)||(16051-16096)
[»] chr6 (8 HSPs)
chr6 (44-101)||(9927714-9927771)
chr6 (1-104)||(27440082-27440185)
chr6 (29-104)||(14328709-14328784)
chr6 (29-104)||(14421719-14421794)
chr6 (29-96)||(16268655-16268722)
chr6 (59-104)||(31738469-31738514)
chr6 (65-97)||(34347314-34347346)
chr6 (29-104)||(293575-293650)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-104)||(47176-47279)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 38281041 - 38280906
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    ||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||    
T  38281041 aaagatcaaacggttaaaataaaaaaaattaataaagtctac-gtagaccacttacagagttggttcaccttagacatttaaagttaaaaactgacggag 38280943  T
Q  101 aggatcacgacttatgggaccaaattgacacaattaa 137  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  38280942 aggatcacaacttatgtgaccaaattgacacaattaa 38280906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 51726779 - 51726854
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||| |||||  || |||||| || | |||||||||| |||| |||||||||||||||||||||||| |||||    
T  51726779 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaacggtgagga 51726854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 21277175 - 21277097
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagaggatca 107  Q
    ||||||| |||||  || |||||| || | |||||||||| |||| ||||||||||| ||||||||| |||||||||||    
T  21277175 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaaaactaatggagaggatca 21277097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 2972943 - 2973010
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaac 96  Q
    |||||||||| || |||||||||  |||| ||||||| || |||| |||||||| |||||||||||||    
T  2972943 ttaataaagtttatagtagaccatctacaaagttggtacaccttagacatttaaagttaaaaactaac 2973010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 52742944 - 52742986
Alignment:
Q  62 tggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||| ||||||||||| | |||||||||||||||||||||    
T  52742944 tggttcaccttaaacatttgatgttaaaaactaacggagagga 52742986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 9633923 - 9633878
Alignment:
Q  62 tggttcatcttaaacatttaaggttaaaaactaacggagaggatca 107  Q
    ||||||| |||| |||||| | ||||||||||||||||||||||||    
T  9633923 tggttcaccttagacatttgatgttaaaaactaacggagaggatca 9633878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 14169770 - 14169733
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaac 96  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  14169770 agttggttcaccttagacatttaaggttaaaaactaac 14169733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 131906 - 132013
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    |||||||||||||||||||||       |||||||||| ||  |||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||||    
T  131906 aaagatcaaacggttaaaattaaaaaatttaataaagtttatggtagtccacttacaaagttggttcaccttagacatttaaggttaaaaactaacggag 132005  T
Q  101 aggatcac 108  Q
    | ||||||    
T  132006 atgatcac 132013  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 28325281 - 28325186
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaac 96  Q
    ||||||||||||||| |||||       |||||||||||||  ||||||||| |||| ||||||| || |||| ||||||||| ||||||||||||    
T  28325281 aaagatcaaacggtttaaatttaaaattttaataaagtctatggtagaccacctacaaagttggtccaccttagacatttaagattaaaaactaac 28325186  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 33459454 - 33459545
Alignment:
Q  5 atcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaac 96  Q
    |||||||||||||||||       ||||||||||| |  ||||||||| |||| |||||||||| |||| ||| ||||||||||||||||||    
T  33459454 atcaaacggttaaaattacaaattttaataaagtccatggtagaccacctacaaagttggttcaccttagacagttaaggttaaaaactaac 33459545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 25154889 - 25154943
Alignment:
Q  47 gaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggaga 101  Q
    ||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||    
T  25154889 gaccacttataaagttggttcaccttagacatttaaggttaaaaacaaacggaga 25154943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 26406288 - 26406234
Alignment:
Q  47 gaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggaga 101  Q
    |||||| |||| |||||||||| |||| ||||||||||||||||| |||||||||    
T  26406288 gaccacctacaaagttggttcaccttagacatttaaggttaaaaaataacggaga 26406234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 46458620 - 46458723
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    ||||||||||||||||||| |       ||||||| |||||  || ||| || || | |||||||||| |||| |||||||||||||||||| |||||||    
T  46458620 aaagatcaaacggttaaaactatgtgatttaataaggtctatggtggactacctataaagttggttcaccttagacatttaaggttaaaaacaaacggag 46458719  T
Q  101 agga 104  Q
    ||||    
T  46458720 agga 46458723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 13286960 - 13287004
Alignment:
Q  60 gttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  13286960 gttgtttcatcttagacatttaaggttaaaaactaacgaagagga 13287004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 27899179 - 27899219
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacgga 99  Q
    |||||||||| |||| | |||||||||||||||||||||||    
T  27899179 agttggttcaccttagatatttaaggttaaaaactaacgga 27899219  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 11114915 - 11114989
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagg 103  Q
    |||||||||||||  ||||||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  11114915 ttaataaagtctatggtagaccacctacaaagttggttcagcttagacatttaaggttaaaaactaacggagagg 11114989  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38555183 - 38555281
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacgga 99  Q
    ||||||||||||||| |||||       |||||||||||||  ||||||||| |||| |||||||||| |||| ||||||||| |||||||||||||||    
T  38555183 aaagatcaaacggtttaaattaaaaaatttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaagattaaaaactaacgga 38555281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 40144741 - 40144655
Alignment:
Q  5 atcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaa 91  Q
    |||||||||||||||||       ||||||||||| | ||||||| |  || | |||||||||| ||||||||||||||||||||||    
T  40144741 atcaaacggttaaaattacaaattttaataaagtccatagtagactatctataaagttggttcaccttaaacatttaaggttaaaaa 40144655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 15787119 - 15787055
Alignment:
Q  44 gtagaccacttacagagtt-ggttcatcttaaacatttaaggttaaaaactaacggagaggatca 107  Q
    ||||||||| |||| |||| ||| || |||| ||||||||||||||||| |||||||||||||||    
T  15787119 gtagaccacctacaaagtttggtgcaccttagacatttaaggttaaaaattaacggagaggatca 15787055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 17319251 - 17319154
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacgg 98  Q
    ||||||| |||||||||||||       |||||||||| ||   |||||||| ||   |||||||||| |||| ||||||||||||||||||||||||    
T  17319251 aaagatccaacggttaaaattaaaaaatttaataaagtttatgatagaccacctaagaagttggttcaccttagacatttaaggttaaaaactaacgg 17319154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 38418985 - 38419024
Alignment:
Q  62 tggttcatcttaaacatttaaggttaaaaactaacggaga 101  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  38418985 tggttcatcttaaacgtttaatgttaaaaactaacggaga 38419024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 6140325 - 6140365
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacgga 99  Q
    |||||||||| |||| | |||||||||||||||||||||||    
T  6140325 agttggttcaccttagatatttaaggttaaaaactaacgga 6140365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35799721 - 35799618
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    |||||||||||||||||||||       |||||||||||||  |||||||||||| | ||||| |||| |||| |||||||||||||||| |||||||||    
T  35799721 aaagatcaaacggttaaaattataacatttaataaagtctatggtagaccacttataaagttgattcaccttagacatttaaggttaaaagctaacggag 35799622  T
Q  101 agga 104  Q
    ||||    
T  35799621 agga 35799618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8537221 - 8537121
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    |||||||||| ||||||||||       |||||||||||||  ||  |||||||| | ||||||| ||||||| ||||||||||||||||||||||||||    
T  8537221 aaagatcaaatggttaaaattaaattttttaataaagtctatggtgaaccacttaaaaagttggtacatcttagacatttaaggttaaaaactaacggag 8537122  T
Q  101 a 101  Q
    |    
T  8537121 a 8537121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 28109822 - 28109879
Alignment:
Q  47 gaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    |||||| |||| |||||||||| |||| ||||||||||||||||| ||||||||||||    
T  28109822 gaccacctacaaagttggttcaccttagacatttaaggttaaaaaataacggagagga 28109879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10367448 - 10367348
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    ||||||||||||||||||| |       ||||||| |||||  || |||||| || | |||||||||| |||| |||||||||||||||||| |||||||    
T  10367448 aaagatcaaacggttaaaagtatgtgatttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaaaacaaacggag 10367349  T
Q  101 a 101  Q
    |    
T  10367348 a 10367348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 12959640 - 12959718
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagaggatca 107  Q
    ||||||| |||||  || |||||| || | |||||||||| |||| ||||||||||||||| || ||||||||||||||    
T  12959640 ttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaagacaaacggagaggatca 12959718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 14509390 - 14509315
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||| |||||  || |||||| || | |||||||| | |||| ||||||||||||||||| ||||||||||||    
T  14509390 ttaataaggtctatggtggaccacctataaagttggtttaccttagacatttaaggttaaaaattaacggagagga 14509315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 25570805 - 25570880
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||| |||||  || |||||| || | |||||||||| |||| ||||||||| ||||||||||||||| ||||    
T  25570805 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaagtttaaaaactaacggaaagga 25570880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 37868947 - 37869047
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    ||||||||||||||||||| |       ||||||| |||||  || |||||| || | |||||| ||| |||| |||||||||||||||||| |||||||    
T  37868947 aaagatcaaacggttaaaagtatgtgatttaataaggtctattgtggaccacctataaagttggctcaccttagacatttaaggttaaaaacaaacggag 37869046  T
Q  101 a 101  Q
    |    
T  37869047 a 37869047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 7490151 - 7490200
Alignment:
Q  50 cacttacagagttggttcatcttaaacatttaaggttaaaaactaacgga 99  Q
    |||||| | |||| ||||| |||| |||||||||||||||||||||||||    
T  7490151 cacttataaagtttgttcaccttagacatttaaggttaaaaactaacgga 7490200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 8395201 - 8395101
Alignment:
Q  4 gatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagg 103  Q
    ||||||||||||||||||       |||||||||| ||  || |||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||||    
T  8395201 gatcaaacggttaaaattaaattttttaataaagtgtatggtggaccacctacaaagttggttcattttaaccatttaaggttaaaaactaacggagagg 8395102  T
Q  104 a 104  Q
    |    
T  8395101 a 8395101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 13366985 - 13367060
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||| |||||  || |||||| || | |||||||||| |||| ||||||||||||||||||||||||||||||    
T  13366985 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaacggagagga 13367060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 44606348 - 44606242
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    ||||||||||||||||||| |       |||| || |||||  || |||||| || | |||||||||| |||| ||||||||||||||||||||| ||||    
T  44606348 aaagatcaaacggttaaaaataaaagatttaacaaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaatggag 44606249  T
Q  101 aggatca 107  Q
    |||||||    
T  44606248 aggatca 44606242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 19913673 - 19913598
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    |||||||||||||  || |||||  || | |||||||||| |||| | ||||||||||||||||||||||||||||    
T  19913673 ttaataaagtctatggtggaccatctataaagttggttcaccttagaaatttaaggttaaaaactaacggagagga 19913598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 39546645 - 39546684
Alignment:
Q  62 tggttcatcttaaacatttaaggttaaaaactaacggaga 101  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  39546645 tggttcatcttaaacatttgatgttaaaaactaacggaga 39546684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 35944059 - 35944017
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacggaga 101  Q
    |||||||||| |||| |||||||| ||||||||||||||||||    
T  35944059 agttggttcaccttagacatttaaagttaaaaactaacggaga 35944017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 2421258 - 2421295
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaac 96  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  2421258 agttggttcaccttagacatttaaggttaaaaactaac 2421295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 8095497 - 8095452
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    |||||||||| |||| ||||||||| ||||||||||||||| ||||    
T  8095497 agttggttcaccttagacatttaagattaaaaactaacggaaagga 8095452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 16363777 - 16363822
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    |||||||||| |||| |||||||| ||||| |||||||||||||||    
T  16363777 agttggttcaccttagacatttaaagttaataactaacggagagga 16363822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 48867365 - 48867432
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaac 96  Q
    |||||||||||||  ||||||||| |||| |||||||||| |||| ||||||||||||||||||||||    
T  48867365 ttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaaggttaaaaactaac 48867432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 23559970 - 23559925
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  23559970 agttggttcatcttagacaattaaggttaaaaactaacggagagga 23559925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 26798841 - 26798916
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    |||||||||| ||  || |||||| |||| |||||||||   |||| |||||||||||||||||||||||||||||    
T  26798841 ttaataaagtgtatggtggaccacctacaaagttggttcgctttaaccatttaaggttaaaaactaacggagagga 26798916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 5123278 - 5123339
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaa 90  Q
    ||||||| |||||  ||||||||| ||||  |||||| |||||||||||||| |||||||||    
T  5123278 ttaataaggtctatggtagaccacatacaatgttggtccatcttaaacatttgaggttaaaa 5123339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 12062349 - 12062385
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaa 95  Q
    |||||||||| |||| |||||||||||||||||||||    
T  12062349 agttggttcaccttagacatttaaggttaaaaactaa 12062385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 223435 - 223332
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    ||||||||||||||| |||||       |||||||||||||  ||||||||| |||| |||||||||| |||| ||||||||| ||||||||||| |||     
T  223435 aaagatcaaacggtttaaattaaaaaatttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaagattaaaaactaatggaa 223336  T
Q  101 agga 104  Q
    ||||    
T  223335 agga 223332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 38471469 - 38471397
Alignment:
Q  30 taataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagag 102  Q
    ||||||||||||  ||||||||| || | |||||||||| |||||||||||||||||||||| |||| |||||    
T  38471469 taataaagtctatggtagaccacctataaagttggttcaccttaaacatttaaggttaaaaattaacagagag 38471397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 5383123 - 5383045
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagaggatca 107  Q
    ||||||| |||||  || |||||| || | ||||| |||| |||| |||||||||||||||||||||||||||||||||    
T  5383123 ttaataaggtctatggtggaccacctataaagttgattcaccttagacatttaaggttaaaaactaacggagaggatca 5383045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 40058199 - 40058127
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggaga 101  Q
    ||||||| |||||  || ||| ||||| | |||||||||| |||| ||||||||| |||||||||||||||||    
T  40058199 ttaataaggtctatggtggactacttataaagttggttcaccttagacatttaagattaaaaactaacggaga 40058127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 2167480 - 2167523
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacggagag 102  Q
    |||||||||| |||| |||||||||||||||||||||| |||||    
T  2167480 agttggttcaccttagacatttaaggttaaaaactaacagagag 2167523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1418 - 1317
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    |||||||||||||||||||||       |||||||||||||  ||||| | |||| | |||||||||| |||||||||||||||||||||| ||||||||    
T  1418 aaagatcaaacggttaaaattaaaaaa-ttaataaagtctatggtagatc-cttataaagttggttcaccttaaacatttaaggttaaaaaataacggag 1321  T
Q  101 agga 104  Q
    ||||    
T  1320 agga 1317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 16096 - 16051
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  16096 agttggttcatcttagacatttaaggttaaaaactaacggagagga 16051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 9927771 - 9927714
Alignment:
Q  44 gtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggaga 101  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  9927771 gtagaccacctacaaagttggttcatcttagacatttaaggttaaaaattaacggaga 9927714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27440082 - 27440185
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    |||||||||||||||||||||       |||||||||| ||  ||||||||| |||| ||||  |||| |||| |||||||| |||||||| ||||||||    
T  27440082 aaagatcaaacggttaaaattaaaaaatttaataaagtttatggtagaccacctacaaagttaattcaccttagacatttaaagttaaaaattaacggag 27440181  T
Q  101 agga 104  Q
    ||||    
T  27440182 agga 27440185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 14328709 - 14328784
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||| |||||  || |||||| || | |||||||||| |||| ||||||||||||||||| ||||||||||||    
T  14328709 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagagga 14328784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 14421719 - 14421794
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||| |||||  || |||||| || | |||||||||| |||| ||||||||||||||||| ||||||||||||    
T  14421719 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagagga 14421794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 16268722 - 16268655
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaac 96  Q
    |||||||||||||  ||||||||| |||| ||||||||||  ||| |||||||||||||| |||||||    
T  16268722 ttaataaagtctatggtagaccacatacaaagttggttcacgttagacatttaaggttaataactaac 16268655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 31738514 - 31738469
Alignment:
Q  59 agttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||||    
T  31738514 agttggttcacattagacatttaaggttaaaaactaacggagagga 31738469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 34347314 - 34347346
Alignment:
Q  65 ttcatcttaaacatttaaggttaaaaactaacg 97  Q
    |||||||||||||||||||||||||||||||||    
T  34347314 ttcatcttaaacatttaaggttaaaaactaacg 34347346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 293575 - 293650
Alignment:
Q  29 ttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggagagga 104  Q
    ||||||| |||||  || |||||| || | |||||||||| |||| |||||||||||||||||  |||||||||||    
T  293575 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaataaacggagagga 293650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47279 - 47176
Alignment:
Q  1 aaagatcaaacggttaaaattnnnnnnnttaataaagtctacagtagaccacttacagagttggttcatcttaaacatttaaggttaaaaactaacggag 100  Q
    |||||||||||||||||||||       |||||||||| ||  ||||||||| |||| ||||  |||| |||| |||||||| |||||||| ||||||||    
T  47279 aaagatcaaacggttaaaattaaaaaatttaataaagtttatggtagaccacctacaaagttaattcaccttagacatttaaagttaaaaattaacggag 47180  T
Q  101 agga 104  Q
    ||||    
T  47179 agga 47176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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