View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_1D_low_8 (Length: 299)
Name: NF8324_1D_low_8
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33115122 - 33115203
Alignment:
| Q |
1 |
catagcaacataacattcatttcaattttcgacaaagcacccaacattaaatctcatttcctccaaaacccagaaactaagg |
82 |
Q |
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| T |
33115122 |
catagcaacataacattcatttcaattttcgacaaagcacccaacattaaatctcatttcctccaaaacccagaaactaagg |
33115203 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 33115410 - 33115450
Alignment:
| Q |
255 |
gaagcagcagagagcttagaaacaagctcaggaacaccaaa |
295 |
Q |
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| T |
33115410 |
gaagcagcagagagcttagaaacaagctcaggaacaccaaa |
33115450 |
T |
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