View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8324_1D_low_9 (Length: 299)
Name: NF8324_1D_low_9
Description: NF8324_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_1D_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 39371632 - 39371894
Alignment:
| Q |
24 |
ttagcatgtgtgaggggtgcaggggctgtggcacgagttacatgtagatgtgtgaatgagcttggaaatgagacaaaccctatatcagtattcagtcatg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39371632 |
ttagcatgtgtgaggggtgcaggggctgtggcacgagttacatgtagatgtgtgaatgagcttggaaatgagacaaaccctatatcagtattcagtcatg |
39371731 |
T |
|
| Q |
124 |
caacaaatggtaaaggttattattttgctacattgtcacatgcaaagcttggatcaaaattgaagattaatgagtgcaaagcatacctagagagttctcc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39371732 |
caacaaatggtaaaggttattattttgctacattgtcacatgcaaagcttggatcaaaattgaagattaatgagtgcaaagcatacctagagagttctcc |
39371831 |
T |
|
| Q |
224 |
attaaatatttgtaaagttcccaccaatgtgaaccatgggattagtggtgctcctctttcttc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39371832 |
attaaatatttgtaaagttcccaccaatgtgaaccatgggattagtggtgctcctctttcttc |
39371894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 28 - 286
Target Start/End: Original strand, 39376222 - 39376480
Alignment:
| Q |
28 |
catgtgtgaggggtgcaggggctgtggcacgagttacatgtagatgtgtgaatgagcttggaaatgagacaaaccctatatcagtattcagtcatgcaac |
127 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||||||| ||||||| ||| |
|
|
| T |
39376222 |
catgtgtgagaaatgcaggggctgtagcacgagttacatgtgaatgtgtgaatgagcttggatatgagacaggtcctataacagtattgagtcatgtaac |
39376321 |
T |
|
| Q |
128 |
aaatggtaaaggttattattttgctacattgtcacatgcaaagcttggatcaaaattgaagattaatgagtgcaaagcatacctagagagttctccatta |
227 |
Q |
| |
|
| || ||||||||||||| | || ||||||||||| |||| || | |||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
39376322 |
agatagtaaaggttattactatgttacattgtcacttgcagagttgggatcaaagttgaagattaacgaatgcaaagcatacctagagagttctccatta |
39376421 |
T |
|
| Q |
228 |
aatatttgtaaagttcccaccaatgtgaaccatgggattagtggtgctcctctttcttc |
286 |
Q |
| |
|
| | ||||||||||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
39376422 |
gagacatgtaaagttcccaccgatgtgaaccatggcatcagtggtgctcctctttcttc |
39376480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University