View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8324_2D_low_1 (Length: 1029)
Name: NF8324_2D_low_1
Description: NF8324_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_2D_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 958; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 958; E-Value: 0
Query Start/End: Original strand, 25 - 1019
Target Start/End: Original strand, 6565143 - 6566137
Alignment:
| Q |
25 |
tttctttctcatttcatacaaaaaccgtagtttctacnnnnnnnttgtttctcacttaatgtgcaaagcaggacaagatggaaaaaggagggagcaggaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565143 |
tttctttctcatttcatacaaaaaccatagtttctacaaaaaaattgtttctcacttaatgtgcaaagcaggacaagatggaaaaaggagggagcaggaa |
6565242 |
T |
|
| Q |
125 |
aatggctgcacataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565243 |
aatggctgcacataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttc |
6565342 |
T |
|
| Q |
225 |
tacacatcatttgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcata |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565343 |
tacacatcatttgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcata |
6565442 |
T |
|
| Q |
325 |
gagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagtcagtgatcgatcaa |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565443 |
gagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagtcagtgatcgatcaa |
6565542 |
T |
|
| Q |
425 |
ttgtattcactatatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcgaa |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565543 |
ttgtattcactatatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcgaa |
6565642 |
T |
|
| Q |
525 |
agtaagaaaaactgtgtattgtgtattttagacgttagagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtg |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565643 |
agtaagaaaaactgtgtattgtgtattttagacgttagagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtg |
6565742 |
T |
|
| Q |
625 |
aatttcagacaaggtttatatcaggaagctgtgtacatttcctccaagaggaatgcagaaaattcgattgactccattgagcagaattccatcaaaggat |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565743 |
aatttcagacaaggtttatatcaggaagctgtgtacatttcctccaagaggaatgcagaaaattcgattgactccattgagcagaattccatcaaaggat |
6565842 |
T |
|
| Q |
725 |
ccaaacatcaaaggtcaaaatcattgtctcaaagtgagcttaattctactaccactaggcctcagatttctcttgccaaaagtgcttctagtagaaagct |
824 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6565843 |
ccaaacatcaaaggtcaaaatcattgtctcaaagtgagcttaattctactaccactaggcctcagatttctcttgccataagtgcttctagtagaaagct |
6565942 |
T |
|
| Q |
825 |
agtaaatgggaagcaattgcattccaaacaagattccttatcatcaataccagaagagaaatctattgaaaagaaaatggctaaagtcatcactccagtg |
924 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565943 |
agtaaatgggaagcaattgcattccaaacaagattccttatcatcaataccagaagaaaaatctattgaaaagaaaatggctaaagtcatcactccagtg |
6566042 |
T |
|
| Q |
925 |
aagaaatcaccaaccaaacaagaatcagctgacaagtgtgtagatcacgtgaagttgcaggtacttaacgatttccaataattactatatgatgt |
1019 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6566043 |
aagaaatcaccaaccaaacaagaatcagctgacaagtgtgtagatcacgtgaagttgcaggtacttaacaatttccaataattactatatgatgt |
6566137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 562 - 688
Target Start/End: Complemental strand, 34260974 - 34260848
Alignment:
| Q |
562 |
gagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtgaatttcagacaaggtttatatcaggaagctgtgtaca |
661 |
Q |
| |
|
|||||| | |||||||| || || ||||||||||| |||||| | | ||||| | ||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
34260974 |
gagcttctagctgaagtggcagtgttggaggaagaagtggttaggcttgaagaacaagttgtgaatttcagacaaggtttatatcaagaagctgtttaca |
34260875 |
T |
|
| Q |
662 |
tttcctccaagaggaatgcagaaaatt |
688 |
Q |
| |
|
||||||| ||||| ||||| ||||||| |
|
|
| T |
34260874 |
tttcctcaaagagaaatgctgaaaatt |
34260848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 34261499 - 34261390
Alignment:
| Q |
276 |
caggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttc |
375 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||||| || | | |||||||||| |
|
|
| T |
34261499 |
caggtagataagttgaagaggaagctaagacatgaagagaatgttcacagagctttagaaagagcatttacaagacctttaggatctttgcctcgtcttc |
34261400 |
T |
|
| Q |
376 |
ctccttatct |
385 |
Q |
| |
|
|||||||||| |
|
|
| T |
34261399 |
ctccttatct |
34261390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University