View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8324_2D_low_2 (Length: 442)
Name: NF8324_2D_low_2
Description: NF8324_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_2D_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 4 - 335
Target Start/End: Original strand, 30276135 - 30276470
Alignment:
| Q |
4 |
tagatagtaaacatatgattttgatgcacgatcaatata---ttacactctcaattgatcacaagatcgtgtgcatggttttgaagttagatatgatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276135 |
tagatagtaaacatatgattttgatgcacgatcaatatactattacactctcaattaatcacaagatcgtgtgcatggttttgaagttagatatgatgaa |
30276234 |
T |
|
| Q |
101 |
agttaaactttggttacaattgattaacagtgtaaaaaatctttataccgaccagtgcacatagattaaatccgacaaaagtatcatgtgtaaaacatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276235 |
agttaaactttggttacaattgattaacggtgtaaaaaatctttataccgaccagtgcatatagattaaatccgacaaaagtatcatgtgtaaaacatga |
30276334 |
T |
|
| Q |
201 |
aattaagaat-caagaatagaaagagaataattgcctgcgtgaaagctcaaggacacgaaccctcttagctctagtaggatcagagcaaccaagcacagc |
299 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276335 |
aattaagaatacaagaatagaaagagaataattgcctgcgtgaaagctcaaggacacgaaccctcttagctctagtaggatcagagcaaccaagcacagc |
30276434 |
T |
|
| Q |
300 |
aagaataccacacattgtagtatatgtttatatgat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30276435 |
aagaataccacacattgtagtatatgtttatatgat |
30276470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 25968511 - 25968604
Alignment:
| Q |
224 |
agaataattgcctgcgtgaaagctcaaggacacgaaccctcttagctctagtaggatcagagcaaccaagcacagcaagaataccacacattgt |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
25968511 |
agaataattgcctgcgagaaagctcaaggatgcgaaccctcttagcttgtgagtcatcagagcaaccaagtacagcaagtataccacacattgt |
25968604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University