View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_2D_low_4 (Length: 339)

Name: NF8324_2D_low_4
Description: NF8324_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_2D_low_4
NF8324_2D_low_4
[»] scaffold0014 (1 HSPs)
scaffold0014 (9-298)||(73430-73719)
[»] chr1 (15 HSPs)
chr1 (157-300)||(39323394-39323536)
chr1 (185-290)||(894930-895034)
chr1 (185-298)||(7785048-7785160)
chr1 (160-298)||(32268001-32268138)
chr1 (157-299)||(31366868-31367008)
chr1 (178-298)||(12482372-12482490)
chr1 (157-260)||(41898834-41898936)
chr1 (148-298)||(51046609-51046758)
chr1 (211-298)||(30742518-30742605)
chr1 (157-259)||(14331867-14331969)
chr1 (189-250)||(32512108-32512169)
chr1 (151-259)||(44359640-44359748)
chr1 (157-228)||(11803334-11803405)
chr1 (159-216)||(21631209-21631266)
chr1 (160-212)||(39421080-39421132)
[»] chr2 (13 HSPs)
chr2 (160-298)||(2958449-2958586)
chr2 (176-298)||(10740392-10740513)
chr2 (229-298)||(43106785-43106854)
chr2 (195-266)||(31167617-31167688)
chr2 (159-297)||(2209895-2210032)
chr2 (177-298)||(9991437-9991557)
chr2 (160-260)||(2239611-2239711)
chr2 (183-259)||(30831648-30831724)
chr2 (157-259)||(10824259-10824359)
chr2 (239-298)||(21362410-21362468)
chr2 (176-259)||(39085788-39085871)
chr2 (160-298)||(6975813-6975949)
chr2 (157-253)||(2805419-2805515)
[»] chr6 (5 HSPs)
chr6 (184-299)||(28541947-28542061)
chr6 (157-298)||(1947397-1947537)
chr6 (159-298)||(16441768-16441906)
chr6 (157-292)||(22616866-22616998)
chr6 (179-261)||(6614878-6614960)
[»] chr7 (18 HSPs)
chr7 (184-298)||(34111836-34111949)
chr7 (160-298)||(33901241-33901378)
chr7 (158-298)||(33474331-33474470)
chr7 (185-300)||(32854076-32854190)
chr7 (157-261)||(36856573-36856677)
chr7 (229-297)||(47663231-47663298)
chr7 (157-298)||(48705623-48705763)
chr7 (176-298)||(3408183-3408304)
chr7 (158-255)||(1907567-1907664)
chr7 (193-293)||(675121-675220)
chr7 (230-298)||(5082486-5082553)
chr7 (157-293)||(38903614-38903749)
chr7 (241-298)||(21577704-21577759)
chr7 (203-260)||(32204211-32204268)
chr7 (162-290)||(5787259-5787386)
chr7 (208-260)||(35239815-35239867)
chr7 (157-298)||(35729406-35729548)
chr7 (160-260)||(40774222-40774322)
[»] chr3 (21 HSPs)
chr3 (157-298)||(9189214-9189354)
chr3 (188-298)||(32070641-32070748)
chr3 (163-298)||(6822784-6822919)
chr3 (166-298)||(15502622-15502753)
chr3 (157-281)||(21195256-21195379)
chr3 (160-252)||(32385585-32385677)
chr3 (157-299)||(23528026-23528165)
chr3 (158-298)||(15005798-15005937)
chr3 (204-298)||(33641244-33641337)
chr3 (157-298)||(41998874-41999014)
chr3 (161-298)||(36051949-36052085)
chr3 (157-259)||(45899520-45899623)
chr3 (160-260)||(34060745-34060846)
chr3 (157-213)||(35502022-35502078)
chr3 (178-260)||(1165785-1165867)
chr3 (184-298)||(46055777-46055890)
chr3 (240-298)||(31378529-31378586)
chr3 (167-260)||(39974792-39974886)
chr3 (157-271)||(46365255-46365368)
chr3 (233-298)||(29454851-29454916)
chr3 (177-298)||(38611350-38611470)
[»] chr4 (20 HSPs)
chr4 (160-298)||(55465442-55465578)
chr4 (184-289)||(56268918-56269022)
chr4 (184-298)||(35498822-35498935)
chr4 (160-298)||(31463273-31463410)
chr4 (185-299)||(45257608-45257721)
chr4 (157-298)||(3180515-3180655)
chr4 (157-234)||(51581433-51581510)
chr4 (157-259)||(13498094-13498196)
chr4 (157-259)||(31010404-31010506)
chr4 (158-260)||(35675168-35675270)
chr4 (203-260)||(32584542-32584599)
chr4 (167-259)||(4867756-4867848)
chr4 (185-293)||(27628862-27628969)
chr4 (203-259)||(52341631-52341687)
chr4 (159-260)||(30617978-30618079)
chr4 (203-260)||(35511203-35511260)
chr4 (185-298)||(48604206-48604316)
chr4 (177-298)||(16559991-16560113)
chr4 (178-298)||(19934463-19934582)
chr4 (185-257)||(20435795-20435867)
[»] chr8 (11 HSPs)
chr8 (184-293)||(40058195-40058304)
chr8 (157-269)||(6237489-6237600)
chr8 (160-260)||(36054962-36055062)
chr8 (157-260)||(7532814-7532917)
chr8 (163-298)||(24066943-24067077)
chr8 (160-259)||(31596401-31596500)
chr8 (196-250)||(24286535-24286589)
chr8 (184-250)||(40451949-40452015)
chr8 (181-259)||(43819568-43819646)
chr8 (236-288)||(11799012-11799063)
chr8 (203-259)||(19389333-19389389)
[»] chr5 (7 HSPs)
chr5 (159-298)||(32522679-32522816)
chr5 (178-298)||(28782676-28782795)
chr5 (160-291)||(10317221-10317351)
chr5 (160-259)||(4293811-4293910)
chr5 (203-266)||(11594700-11594763)
chr5 (157-234)||(19804490-19804567)
chr5 (203-259)||(25017314-25017370)
[»] scaffold0169 (1 HSPs)
scaffold0169 (160-291)||(8988-9118)
[»] scaffold0050 (1 HSPs)
scaffold0050 (152-216)||(37361-37425)
[»] scaffold0045 (2 HSPs)
scaffold0045 (231-298)||(62629-62694)
scaffold0045 (231-298)||(69961-70026)


Alignment Details
Target: scaffold0014 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 73719 - 73430
Alignment:
Q  9 attattctacaaggatttcaataaaatccaatctaagagttaagtctgaataatatatttgtaatacaaatcaaacaattattatacaaatgaaatgaag 108  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  73719 attaatctacaaggatttcattagaatccaatctaagagttaagtctgaataatatatttgtaatacaaatcaaacaattattatacaaatgaaatgatg 73620  T
Q  109 taagctaagtgacttatagcttgtccatatactcatctttataaataggggaaatgctaaagagtgttcttgggacattggtt-aaaagaacaataatag 207  Q
    |||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| | | ||||||| ||| |||||||||||||| |    
T  73619 taagctaactgacttatagcttgtccatatagtcatctttataagta-gggaaatgctaaagagtgtccataggacattagttaaaaagaacaataattg 73521  T
Q  208 aaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  73520 aaatattgtgttggaaagtgataaaaagttatgaattcaactttttaaaagtttgaaaaattataattttcaatgtaaaactactattttt 73430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 300
Target Start/End: Complemental strand, 39323536 - 39323394
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  39323536 gggaaatgctaaagagtgttcttagtacattggttaagtgaacaataatagaaatattgtgttggaaagtggtaaaaagtgatgaattcaacattttaaa 39323437  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactactatttttta 300  Q
    |||||| ||||||||| |||  ||| ||||||||||||||||||    
T  39323436 agtttg-aaaattgtagtttctaatataaaactactatttttta 39323394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 895034 - 894930
Alignment:
Q  185 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 284  Q
    ||||||||| |||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  895034 attggttaagagaacagtaatagaaatattatgttggaaagttgtgaaaagtgatgaattcaactttttaaaagtttg-aaaattgtagtttccaatgta 894936  T
Q  285 aaacta 290  Q
    ||||||    
T  894935 aaacta 894930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 7785160 - 7785048
Alignment:
Q  185 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 284  Q
    ||||||||| |||||||||||| |||||||||||| ||||    | ||||||||||||||||| |||| | ||||||| ||||||||| ||||||||| |    
T  7785160 attggttaagagaacaataataaaaatattgtgttagaaaccggtgaaaagtgatgaattcaatttttcataagtttg-aaaattgtagttttcaatgca 7785062  T
Q  285 aaactactattttt 298  Q
    ||||||||||||||    
T  7785061 aaactactattttt 7785048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 32268138 - 32268001
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||||||||| ||||| ||||| |||||||||||  |||| ||||| | ||||| ||| |  | ||||||| ||||||||||||| ||||||     
T  32268138 aaatgctaaagagtgtttttggggcattgattaaaagaacataaataaaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaaag- 32268040  T
Q  260 ttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    |  |||||||||||||| ||| |||||||||||| ||||    
T  32268039 tcaaaaaattgtaatttccaacgtaaaactactactttt 32268001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 299
Target Start/End: Original strand, 31366868 - 31367008
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||||||| |||||||||  |||| || |||| |||| ||||||| |||||||||||  |||| |||||| || ||||||| ||||||||| ||||||||    
T  31366868 gggaaatgttaaagagtgcccttgtgatattgattaagagaacaaaaatagaaatatcatgttagaaagtgatgaaaagtggtgaattcaattttttaaa 31366967  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactactatttttt 299  Q
    ||||  |||| || | |||| |||||||||  |||||||||||    
T  31366968 agtt--aaaattttttatttccaatgtaaagttactatttttt 31367008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 12482372 - 12482490
Alignment:
Q  178 ttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatttt 277  Q
    |||||| ||||| |||| |||||| |||| |||| |||||||||||| | |||||||||||| || ||||||| | ||||||||  ||||||||  ||||    
T  12482372 ttgggatattggataaaggaacaaaaataaaaattttgtgttggaaaatgataaaaagtgatcaaatcaacttgtaaaaagttt--aaaattgttgtttt 12482469  T
Q  278 caatgtaaaactactattttt 298  Q
     ||||||||||||||| ||||    
T  12482470 taatgtaaaactactaatttt 12482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 41898834 - 41898936
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||||||| |||||||||||||| |||| |||||||| | || |  |||||||||||||| ||| ||| |  |||||||||||||||| |||||||||||    
T  41898834 gggaaatgttaaagagtgttcttaggacgttggttaaga-aatacaaatagaaatattgtattgaaaaatggtaaaaagtgatgaatttaactttttaaa 41898932  T
Q  257 agtt 260  Q
    ||||    
T  41898933 agtt 41898936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 298
Target Start/End: Original strand, 51046609 - 51046758
Alignment:
Q  148 tataaataggggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaa 247  Q
    |||| ||| ||||||||||||| | ||  ||| ||||||||||||| ||||||  |||||||||| | ||||| ||| |  | ||||||| |||||||||    
T  51046609 tatatatatgggaaatgctaaacaatgcccttaggacattggttaagagaacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaa 51046708  T
Q  248 ctttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||||||| |  |||| |||| |||| ||||| |||||||||| ||||    
T  51046709 ctttttaaaag-tcaaaaagttgtcatttccaatgcaaaactactactttt 51046758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 30742518 - 30742605
Alignment:
Q  211 tattgtgttggaaagttataaaaagtgatgaattcaac-tttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||||||||| |||||||||| |||| |||  ||||||| |||||||    
T  30742518 tattgtgttggaaagtggtaaaaagtaatgaattcaacttttttaaaagttt-aaaaattgtagtttttaatacaaaactattattttt 30742605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 14331969 - 14331867
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||||||||  |||||| ||||||||||||  | || |||||||| ||||| |||| || |  | |||| ||| ||||| |||||||||||    
T  14331969 gggaaatgctaaagagtgcccttggggcattggttaaaatgataaaaatagaaacattgtattgggaaatggtgaaaaatgaagaatttaactttttaaa 14331870  T
Q  257 agt 259  Q
    |||    
T  14331869 agt 14331867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 32512169 - 32512108
Alignment:
Q  189 gttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 250  Q
    |||||| |||||| ||||||||| |||||||||||| | |||||||||||| || |||||||    
T  32512169 gttaaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtgatcaagtcaactt 32512108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 44359640 - 44359748
Alignment:
Q  151 aaataggggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 250  Q
    ||||| ||||||||||||||||||  |||||| |||||||||| |  | || |||||||| ||||| | || || |  | |||||||| ||||| |||||    
T  44359640 aaataagggaaatgctaaagagtgcccttgggccattggttaagatgataaaaatagaaacattgtatcgggaaatggtgaaaagtgaagaatttaactt 44359739  T
Q  251 tttaaaagt 259  Q
    |||||||||    
T  44359740 tttaaaagt 44359748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 11803334 - 11803405
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagtta 228  Q
    ||||||||||||| |||  | ||||| ||||||||||| |||||| |||||||||||  |||||| ||||||    
T  11803334 gggaaatgctaaatagtactattggggcattggttaaatgaacaaaaatagaaatatcttgttgggaagtta 11803405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 21631209 - 21631266
Alignment:
Q  159 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgt 216  Q
    |||||||||||||||||  |||||||||||||||| |  | || ||||||||||||||    
T  21631209 gaaatgctaaagagtgtctttgggacattggttaagatgataaaaatagaaatattgt 21631266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 39421132 - 39421080
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaata 212  Q
    ||||| |||| ||||| ||||||||||||||||| ||||||  ||||||||||    
T  39421132 aaatgttaaacagtgtccttgggacattggttaagagaacataaatagaaata 39421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 2958449 - 2958586
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||  | |||||| ||||||| ||||||||||||||    
T  2958449 aaatgctaaatagtgtccttgggacattgtttaaaagaacaataatgaaaatattgtgttggaaagtggtgaaaagttatgaatttaactttttaaaagt 2958548  T
Q  260 ttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||| ||||||||| |||||||||||||||||||||||||    
T  2958549 ttg-aaaattgtatttttcaatgtaaaactactattttt 2958586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 10740392 - 10740513
Alignment:
Q  176 tcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatt 275  Q
    |||| |||||||||||||| || |||||||| |||||||||||  | ||||  ||||||||||||||||||| ||||||||||||| ||||||||||||     
T  10740392 tcttaggacattggttaaaggagcaataatataaatattgtgtgaggaagtggtaaaaagtgatgaattcaattttttaaaagttt-aaaaattgtaatc 10740490  T
Q  276 ttcaatgtaaaactactattttt 298  Q
    |||||||||||||||||||||||    
T  10740491 ttcaatgtaaaactactattttt 10740513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 43106785 - 43106854
Alignment:
Q  229 taaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  43106785 taaaaagtgatcaatttaactttttaaaagtttgaaaaattgtagttatcaatgtaaaactactattttt 43106854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 31167688 - 31167617
Alignment:
Q  195 agaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaa 266  Q
    |||||||||||| |||||||||||| |||| | || |||| ||||||||| |||||||||||||||||||||    
T  31167688 agaacaataataaaaatattgtgttagaaaatgatgaaaattgatgaatttaactttttaaaagtttgaaaa 31167617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 2209895 - 2210032
Alignment:
Q  159 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 258  Q
    |||||| ||||||||| |||||||||||||||||| ||||  | |||| ||| | ||| ||||||| |  |||||||| ||||||||||||||| |||||    
T  2209895 gaaatgttaaagagtgctcttgggacattggttaagagaattaaaataaaaaaaatgtattggaaaatggtaaaaagttatgaattcaacttttgaaaag 2209994  T
Q  259 tttgaaaaattgtaattttcaatgtaaaactactatttt 297  Q
     |  ||||||||| | ||||||||| ||  |||||||||    
T  2209995 -tcaaaaaattgttaatttcaatgttaacttactatttt 2210032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 9991437 - 9991557
Alignment:
Q  177 cttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattt 276  Q
    |||||| |||||| ||||  ||||| ||||||||| |||| ||||||| | |||||||||  | || ||||||| | |||| ||| | |||||||  |||    
T  9991437 cttggggcattggataaagaaacaaaaatagaaattttgtattggaaaatgataaaaagtagtcaaatcaacttgtaaaaaattt-ataaattgttgttt 9991535  T
Q  277 tcaatgtaaaactactattttt 298  Q
    ||||||||||||||||| ||||    
T  9991536 tcaatgtaaaactactaatttt 9991557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 2239711 - 2239611
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    |||||||||||| || |||| ||||||||||||| || | ||  ||||||||||||   || ||| |  |||||| ||||||||| ||||||||||||||    
T  2239711 aaatgctaaagaatgctcttaggacattggttaagaggataaagatagaaatattgcaatgaaaaatggtaaaaaatgatgaatttaactttttaaaagt 2239612  T
Q  260 t 260  Q
    |    
T  2239611 t 2239611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 30831724 - 30831648
Alignment:
Q  183 acattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||| | || || |||||||||||||  ||  ||| ||||||||| ||||||||| ||||||||||||||    
T  30831724 acattggttaacaaaataaaaatagaaatattgcattaaaaaattataaaaaatgatgaatttaactttttaaaagt 30831648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 10824359 - 10824259
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||||||| |||||||||  ||| ||||||||||||| ||||||  |||| ||||| | |||||||||||  | |||| || |||||| |||||| ||||    
T  10824359 gggaaatgttaaagagtg--cttaggacattggttaagagaacataaataaaaataatttgttggaaagtggtgaaaaatgttgaatttaactttctaaa 10824262  T
Q  257 agt 259  Q
    |||    
T  10824261 agt 10824259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 21362468 - 21362410
Alignment:
Q  239 tgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||||||||| |||||||||| ||| |||| |||| ||||||||| |||||||||||    
T  21362468 tgaattcaactttataaaagtttg-aaagttgttatttccaatgtaaatctactattttt 21362410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 39085788 - 39085871
Alignment:
Q  176 tcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    |||||||||||||| |||| | | || |||||||||||    ||||||| | |||||||||||| |||| ||||||||||||||    
T  39085788 tcttgggacattggataaagggataaaaatagaaatataacattggaaaatgataaaaagtgataaatttaactttttaaaagt 39085871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 6975813 - 6975949
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||||||| | |  | ||||||| ||| ||||||| |||| ||||| | ||||| |||||  | |||| || ||||||||||| | || ||||    
T  6975813 aaatgctaaagagtgctttcagaacattggctaagagaacaaaaataaaaataatatgttg-aaagtggtgaaaaatgttgaattcaactctctagaagt 6975911  T
Q  260 ttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    || |||| |||||| ||| ||||||||||||||| ||||    
T  6975912 tt-aaaagttgtaagtttaaatgtaaaactactactttt 6975949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 2805515 - 2805419
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaacttttt 253  Q
    |||||||| |||||||||| ||   |||||||||||| || | || |||| || |||||| ||| ||| | || |||||||||||||| ||||||||    
T  2805515 gggaaatgttaaagagtgtcctgaagacattggttaagaggataaaaatataagtattgtattgaaaaataattaaaagtgatgaatttaacttttt 2805419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 28542061 - 28541947
Alignment:
Q  184 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 283  Q
    |||||||||| |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  28542061 cattggttaagagaacaataataaaaatattgtgttggaaagtagtaaaaagtgatgaattcaactttttaaaagtttg-aaaattgtagttttcaatgt 28541963  T
Q  284 aaaactactatttttt 299  Q
    |||| |||||||||||    
T  28541962 aaaattactatttttt 28541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 298
Target Start/End: Complemental strand, 1947537 - 1947397
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||||||||||||||||||||||| | |||||||||| ||||||  |||||||||| | ||||||||| |  ||||||||| | ||||||||||| ||||    
T  1947537 gggaaatgctaaagagtgttcttgaggcattggttaagagaacataaatagaaataatttgttggaaaatggtaaaaagtgttaaattcaactttctaaa 1947438  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    || |  |||| ||||||||| ||||  |||||||||| ||||    
T  1947437 ag-tcaaaaagttgtaatttccaatacaaaactactactttt 1947397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 16441768 - 16441906
Alignment:
Q  159 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 258  Q
    ||||||||||||||||||||| |||||||||||||||||| |  |||| ||||| | ||||| |||||  | |||| || ||||||||| ||| ||||||    
T  16441768 gaaatgctaaagagtgttctttggacattggttaaaagaatataaatataaataatttgttgaaaagtggtgaaaaatgttgaattcaaatttctaaaag 16441867  T
Q  259 tttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
     |  |||| |||||||||  |||| |||| ||||||||||    
T  16441868 -taaaaaagttgtaatttctaatgcaaaattactattttt 16441906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 292
Target Start/End: Complemental strand, 22616998 - 22616866
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||  | ||| |||||| |||||| ||||| ||||| |||||||  ||||||||||||| | |||||||||  | || ||||||| | |||    
T  22616998 gggaaatgctaatcattgtccttggggcattggataaaataacaaaaatagaa--attgtgttggaaaatgataaaaagtagtcaaatcaacttataaaa 22616901  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactact 292  Q
    ||||| | |||||||  ||| |||||||||||||||    
T  22616900 agttt-ataaattgttgtttccaatgtaaaactact 22616866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 6614878 - 6614960
Alignment:
Q  179 tgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagttt 261  Q
    |||| |||||| |||| |||||| ||||||||| |||||||||||| | |||||||||| | || ||||||| | ||||||||    
T  6614878 tggggcattggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtggtcaaatcaacttgtaaaaagttt 6614960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 298
Target Start/End: Original strand, 34111836 - 34111949
Alignment:
Q  184 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 283  Q
    |||||||||| ||||||||||||||||||||||||||| ||||  |||||| ||| | |||||||||||||||||||| ||||||||||||||||||||     
T  34111836 cattggttaagagaacaataatagaaatattgtgttgggaagtggtaaaaaatgaaggattcaactttttaaaagttt-aaaaattgtaattttcaatgc 34111934  T
Q  284 aaaactactattttt 298  Q
    |||||||||||||||    
T  34111935 aaaactactattttt 34111949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 33901378 - 33901241
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||||||||  || ||||||||||||| |||||||||||||||||||| | |||||||||  ||||| |||||||| ||||||||| ||||||    
T  33901378 aaatgctaaagagtgtctttaggacattggttaatagaacaataatagaaatattatcttggaaagtggtaaaatgtgatgaactcaacttttaaaaagt 33901279  T
Q  260 ttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||| ||||||||| ||| |||| ||||| || |||||||    
T  33901278 ttg-aaaattgtagtttccaatttaaaattattattttt 33901241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 298
Target Start/End: Complemental strand, 33474470 - 33474331
Alignment:
Q  158 ggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 257  Q
    |||||||||||| |||||| ||||| |||||||||| ||||||| |||||||||| | ||||| ||| |||| ||||||| ||||||||||||| |||||    
T  33474470 ggaaatgctaaatagtgtttttggggcattggttaagagaacaaaaatagaaataatttgttgaaaaattatgaaaagtgttgaattcaactttctaaaa 33474371  T
Q  258 gtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    | |  |||| ||||||||||||||| |||| ||||||||||    
T  33474370 g-tcaaaaagttgtaattttcaatgcaaaattactattttt 33474331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 32854190 - 32854076
Alignment:
Q  185 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 284  Q
    ||||||||| |||||||||||| ||||||| ||||||||| |  ||||| ||||||||||||||||||||||||||| ||||||| || ||| ||| ||     
T  32854190 attggttaagagaacaataataaaaatattatgttggaaaatagtaaaatgtgatgaattcaactttttaaaagttt-aaaaattatagtttccaacgtc 32854092  T
Q  285 aaactactatttttta 300  Q
    |||||||| |||||||    
T  32854091 aaactactctttttta 32854076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 36856677 - 36856573
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||||||||| ||| || |||||| |||| |||||| |||||||||  ||| || |||||| |||||||||||| || ||||||| | |||    
T  36856677 gggaaatgctaaagagtgtccttagggcattggataaaggaacaaaaatagaaattgtgtattagaaagtgataaaaagtgatcaagtcaacttgtaaaa 36856578  T
Q  257 agttt 261  Q
    |||||    
T  36856577 agttt 36856573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 47663298 - 47663231
Alignment:
Q  229 taaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactatttt 297  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||||||||||  ||||||||||||||    
T  47663298 taaaaagtgatgaattaaactatttaaaagttt-aaaaattgtaattttcaatacaaaactactatttt 47663231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 298
Target Start/End: Complemental strand, 48705763 - 48705623
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||| ||||||| |||||  |||||| ||||| |||| ||||||  |||||||||| | ||||| ||| |  | ||||||| ||||||||||||| ||||    
T  48705763 gggagatgctaaggagtggccttggggcattgtttaagagaacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaa 48705664  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    || || |||| |||||||||  |||| |||||||||| ||||    
T  48705663 ag-ttaaaaagttgtaatttctaatgcaaaactactactttt 48705623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 298
Target Start/End: Complemental strand, 3408304 - 3408183
Alignment:
Q  176 tcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatt 275  Q
    |||||||||||||  ||||||||||| ||||||||| |||||||| ||| | |||||||||  | || ||||||| | ||||| || | |||||||  ||    
T  3408304 tcttgggacattgaataaaagaacaaaaatagaaattttgtgttgaaaaatgataaaaagtagtcaagtcaacttgtaaaaag-ttaataaattgttgtt 3408206  T
Q  276 ttcaatgtaaaactactattttt 298  Q
    | ||||||||| |||||| ||||    
T  3408205 tccaatgtaaagctactaatttt 3408183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 1907567 - 1907664
Alignment:
Q  158 ggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaa 255  Q
    ||||||||||||||||| ||||| |||||||| |||||| | || || ||||||||||| ||| ||| |  |||||| | ||||||| || |||||||    
T  1907567 ggaaatgctaaagagtgctcttgagacattggataaaaggataaaaagagaaatattgtattgaaaaatggtaaaaaataatgaatttaattttttaa 1907664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 293
Target Start/End: Original strand, 675121 - 675220
Alignment:
Q  193 aaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactact 292  Q
    |||||| || ||||||||| |||||||||||| | |||||||||| | || ||||||  | |||||||| | |||||||  ||||||||||||| |||||    
T  675121 aaagaaaaaaaatagaaattttgtgttggaaaataataaaaagtggtcaaatcaactagtaaaaagttt-ataaattgttgttttcaatgtaaagctact 675219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 5082553 - 5082486
Alignment:
Q  230 aaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    |||||||| |||||||||||||||||||| |  |||| ||||||||| ||||| |||||||||| ||||    
T  5082553 aaaaagtgttgaattcaactttttaaaag-tcaaaaagttgtaatttccaatgcaaaactactactttt 5082486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 293
Target Start/End: Complemental strand, 38903749 - 38903614
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||||||| || |||| | |||||||  ||| ||||||||||||| |||| ||||||||||||  |||||  | |||| |||  ||||  ||||||||||    
T  38903749 gggaaatgatagagagggctcttgggggattagttaaaagaacaacaataaaaatattgtgttaaaaagtggttaaaaatgacaaattatactttttaaa 38903650  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactacta 293  Q
    ||||| |||||||||| |||  |||| |||| |||||    
T  38903649 agttt-aaaaattgtagtttcaaatgaaaaattacta 38903614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 21577704 - 21577759
Alignment:
Q  241 aattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    |||| ||||||||||||||||  ||||||||| ||| ||||||||||||| |||||||    
T  21577704 aatttaactttttaaaagttt--aaaattgtagtttccaatgtaaaactagtattttt 21577759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 32204268 - 32204211
Alignment:
Q  203 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 260  Q
    |||||||||||||  ||| ||| | || |||||||||||||| |||||||||||||||    
T  32204268 aatagaaatattgcattgaaaaatgatgaaaagtgatgaatttaactttttaaaagtt 32204211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 5787386 - 5787259
Alignment:
Q  162 atgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagttt 261  Q
    |||||||||||||  |||| || ||||| || | |||||| |||| |||  || ||||||||||| |||||||||| | || ||| ||| | ||||||||    
T  5787386 atgctaaagagtgcccttgtgatattggatagaggaacaaaaataaaaaatttatgttggaaagtgataaaaagtggtcaagtcatcttataaaaagttt 5787287  T
Q  262 gaaaaattgtaattttcaatgtaaaacta 290  Q
     | ||||| |  |||||||||||||||||    
T  5787286 -acaaattattgttttcaatgtaaaacta 5787259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 35239815 - 35239867
Alignment:
Q  208 aaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 260  Q
    |||||| |||||| ||| | |||||| |||||||||| |||||||||||||||    
T  35239815 aaatatggtgttgaaaaatgataaaacgtgatgaatttaactttttaaaagtt 35239867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 298
Target Start/End: Original strand, 35729406 - 35729548
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaa--agaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaacttttta 254  Q
    |||||||| |||||||||  ||||||||||||  ||||  | || || |||||||||  ||||||| ||||| |||||||||| | || ||||||| | |    
T  35729406 gggaaatgttaaagagtgcccttgggacattgaataaaggaaaaaaaaaatagaaattgtgtgttgaaaagtgataaaaagtggttaagtcaacttgtaa 35729505  T
Q  255 aaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||| ||| | ||||| |  ||| |||||||||||||||| ||||    
T  35729506 aaaattt-ataaattattgtttccaatgtaaaactactaatttt 35729548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 40774222 - 40774322
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||| ||||||||||  ||||||||||| |||| |  | |  |||||||||||||  ||| ||| | || |||| ||||||||| ||||||||||||||    
T  40774222 aaatgttaaagagtgtcattgggacattgattaagaagatacaaatagaaatattgcattgaaaaatgatgaaaattgatgaatttaactttttaaaagt 40774321  T
Q  260 t 260  Q
    |    
T  40774322 t 40774322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 298
Target Start/End: Complemental strand, 9189354 - 9189214
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||||||| |||||||||  ||| ||   ||||||||  ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  9189354 gggaaatgttaaagagtgcccttagggtgttggttaagtgaacaataatagaaatattatgttggaaagtggtaaaaagtgatgaattcaactttttaaa 9189255  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
     || || ||||||||| ||||| |||||||||||||||||||    
T  9189254 tgtgtg-aaaattgtagttttctatgtaaaactactattttt 9189214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 298
Target Start/End: Complemental strand, 32070748 - 32070641
Alignment:
Q  188 ggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaa 287  Q
    |||||||||||||||||||  |||||||||||| |||||  | |||||||||||||||||||||||||||||||| |||||| ||||||| ||| |||||    
T  32070748 ggttaaaagaacaataata--aatattgtgttgaaaagtggtgaaaagtgatgaattcaactttttaaaagtttg-aaaattataatttttaatataaaa 32070652  T
Q  288 ctactattttt 298  Q
    |||||||||||    
T  32070651 ctactattttt 32070641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 6822784 - 6822919
Alignment:
Q  163 tgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttg 262  Q
    |||||| ||||| ||||  |||||||||||| |||||||||| |  ||||||||||||||||||  |||||||||||||||||||||||||||||||||     
T  6822784 tgctaatgagtgctcttatgacattggttaagagaacaataaaa--aatattgtgttggaaagtggtaaaaagtgatgaattcaactttttaaaagtttt 6822881  T
Q  263 aaaa--attgtaattttcaatgtaaaactactattttt 298  Q
    ||||   | ||| |||||||||||||| || |||||||    
T  6822882 aaaattgtagtagttttcaatgtaaaattattattttt 6822919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 298
Target Start/End: Original strand, 15502622 - 15502753
Alignment:
Q  166 taaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaa 265  Q
    |||||||||| |||| |||||||||||| ||||||| |||||||||| | ||||| ||| |  |||||| || |||||||||||||||||||| || |||    
T  15502622 taaagagtgtccttgagacattggttaagagaacaaaaatagaaataatttgttgaaaaatggtaaaaaatgttgaattcaactttttaaaag-ttaaaa 15502720  T
Q  266 aattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||||||| ||||  |||||| ||||||||    
T  15502721 aattgtaatttccaatacaaaactgctattttt 15502753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 157 - 281
Target Start/End: Original strand, 21195256 - 21195379
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||| ||  | |||| ||||||||||||| |||||| |||||||||||  ||||||||||| || ||||||| ||||||||||||||||||    
T  21195256 gggaaatgctaaatagaatccttgagacattggttaaaggaacaaaaatagaaatatcttgttggaaagtgatgaaaagtggtgaattcaactttttaaa 21195355  T
Q  257 agtttgaaaaattgtaattttcaat 281  Q
    || || ||||||||| |||| ||||    
T  21195356 ag-ttaaaaaattgttatttccaat 21195379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 32385585 - 32385677
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttt 252  Q
    ||||||||||||||||  ||  | |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  32385585 aaatgctaaagagtgtctttaaggcattggttaagagaacaataatagtaatattgtgttggaaagtaataaaaagtgatgaattcaagtttt 32385677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 299
Target Start/End: Original strand, 23528026 - 23528165
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||||||||||||||||   ||| ||||||||||||| ||||||  ||||| | ||||||||||||||||  | |||| |||||||||||||||||||||    
T  23528026 gggaaatgctaaagagtac-ctttggacattggttaagagaacacaaataggactattgtgttggaaagtggtgaaaa-tgatgaattcaactttttaaa 23528123  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactactatttttt 299  Q
    |||||| ||||||||| ||| |||| || || || ||||||||    
T  23528124 agtttg-aaaattgtagtttccaatatagaaatattatttttt 23528165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 298
Target Start/End: Complemental strand, 15005937 - 15005798
Alignment:
Q  158 ggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 257  Q
    ||||||| |||| |||||  |||||||||||||||| ||||||  || ||||||| | | | | ||| |  ||||||||| ||||||||||||| |||||    
T  15005937 ggaaatgttaaatagtgtctttgggacattggttaagagaacataaacagaaataatttatggaaaaatggtaaaaagtgttgaattcaactttgtaaaa 15005838  T
Q  258 gtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    |||  |||||||||||||||||||| |||||||||| ||||    
T  15005837 gtta-aaaaattgtaattttcaatgcaaaactactactttt 15005798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 33641337 - 33641244
Alignment:
Q  204 atagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||||||| ||||||||| |  | |||| |||| |||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||    
T  33641337 atagaaatattatgttggaaattggtgaaaaatgataaattcaactttttaaaagttt-taaaattgtagttttcaacgtaaaactactattttt 33641244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 298
Target Start/End: Complemental strand, 41999014 - 41998874
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    |||||||| |||||||||  ||||||||||||||||| ||||||  |||||||||| | ||||| ||| |  | ||||||| | ||||||||||| ||||    
T  41999014 gggaaatgttaaagagtgcccttgggacattggttaagagaacataaatagaaataatttgttgaaaaatggtgaaaagtgttaaattcaactttataaa 41998915  T
Q  257 agtttgaaaaa--ttgtaattttcaatgtaaaactactattttt 298  Q
    |||   |||||  ||||||||||||| | |||||||||| ||||    
T  41998914 agt---aaaaatgttgtaattttcaaagcaaaactactactttt 41998874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 36051949 - 36052085
Alignment:
Q  161 aatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 260  Q
    ||||||||||||||  ||  || |||||||||| | | ||| |||||||||||| |||||| || | || |||||||  |||||  |||||||||||| |    
T  36051949 aatgctaaagagtgccctcagggcattggttaagaaagcaaaaatagaaatattatgttgggaaatgatgaaaagtggagaatttcactttttaaaag-t 36052047  T
Q  261 tgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    | || |||||| |||||||||| |||||||||||||||    
T  36052048 taaacaattgttattttcaatgcaaaactactattttt 36052085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 259
Target Start/End: Original strand, 45899520 - 45899623
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttat-aaaaagtgatgaattcaactttttaa 255  Q
    |||||| | ||||||||| ||||||| |||||| ||| |||| || |||||||||||| | ||||||| | || ||||||||||||||| || |||||||    
T  45899520 gggaaacgttaaagagtgctcttggggcattggataagagaataaaaatagaaatattatattggaaaatgatgaaaaagtgatgaatttaaatttttaa 45899619  T
Q  256 aagt 259  Q
    ||||    
T  45899620 aagt 45899623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 34060745 - 34060846
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaa-aagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 258  Q
    |||||||||||||||| |||||  |||||||||| ||||  || |||| ||||||||| ||| ||| |  | |||||||||||||| |||||||||||||    
T  34060745 aaatgctaaagagtgtccttggtgcattggttaagaagataaaaaataaaaatattgtattgaaaaatggtgaaaagtgatgaatttaactttttaaaag 34060844  T
Q  259 tt 260  Q
    ||    
T  34060845 tt 34060846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 35502078 - 35502022
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatat 213  Q
    |||||||| ||||||||||||||||||||||||| || ||||| | |||||||||||    
T  35502078 gggaaatgataaagagtgttcttgggacattggtcaagagaacgaaaatagaaatat 35502022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 1165867 - 1165785
Alignment:
Q  178 ttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 260  Q
    |||||||||||||||  ||||||  |||||||||| | ||||| ||||| || |||| || ||||||||||||| ||||||||    
T  1165867 ttgggacattggttatgagaacataaatagaaataatttgttgaaaagtgatgaaaaatgttgaattcaactttctaaaagtt 1165785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 298
Target Start/End: Original strand, 46055777 - 46055890
Alignment:
Q  184 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 283  Q
    |||||| |||| |||||| ||||||||| |||||||||||| | |||||||||  | || ||||||| | ||||| || | |||||||  |||| |||||    
T  46055777 cattggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaag-ttaataaattgttgtttttaatgt 46055875  T
Q  284 aaaactactattttt 298  Q
    |||||||||| ||||    
T  46055876 aaaactactaatttt 46055890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 31378529 - 31378586
Alignment:
Q  240 gaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    |||||||||||||||||||||| ||||||  |  |||||||||||||||||||| ||||    
T  31378529 gaattcaactttttaaaagttt-aaaaatcattgttttcaatgtaaaactactactttt 31378586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 39974792 - 39974886
Alignment:
Q  167 aaagagtgttcttgggacattggttaaaagaa-caataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 260  Q
    ||||||||| ||||| ||||||||| |||| | ||| |||| ||||||||  || |||| | || | |||||||||||| |||||||||||||||    
T  39974792 aaagagtgtccttggaacattggttgaaaggatcaaaaataaaaatattgcattagaaaatgatgagaagtgatgaatttaactttttaaaagtt 39974886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 46365368 - 46365255
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||||||||   || |  ||||| |||| ||||||| |||||||||||||| |||  || |  ||||| ||| |||||| |||||||||||    
T  46365368 gggaaatgctaaagagtgcctttagagcattgtttaagagaacaaaaatagaaatattgtattgagaaatggtaaaacgtggtgaattgaactttttaaa 46365269  T
Q  257 agtttgaaaaattgt 271  Q
    || || |||||||||    
T  46365268 agctt-aaaaattgt 46365255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 29454916 - 29454851
Alignment:
Q  233 aagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||| ||||||||||||| |||||  || ||||||||| |||||||||| || || |||||||||    
T  29454916 aagtggtgaattcaactttataaaaagtttaaaaattgttattttcaatgcaagacaactattttt 29454851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 38611470 - 38611350
Alignment:
Q  177 cttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattt 276  Q
    ||||||||||||| |||| ||| || ||||||||| |||||||||||| | ||| |||||  | || ||||||| | |||||||| | |||||||  |||    
T  38611470 cttgggacattggataaaggaagaaaaatagaaattttgtgttggaaaatgatagaaagttgtcaagtcaacttgtaaaaagttt-ataaattgttgttt 38611372  T
Q  277 tcaatgtaaaactactattttt 298  Q
     |||| |||| |||||| ||||    
T  38611371 ccaatataaagctactaatttt 38611350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 55465442 - 55465578
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    |||||||||||  ||| ||| || |||||||||| ||| ||||||||||||||||||||||| ||||  |||||| ||||||||||||| ||||||||||    
T  55465442 aaatgctaaaggatgtccttagggcattggttaagagatcaataatagaaatattgtgttgggaagtggtaaaaaatgatgaattcaacattttaaaagt 55465541  T
Q  260 ttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||  ||||||||| |||  ||| ||||||||||||||||    
T  55465542 tt--aaaattgtagtttctaatataaaactactattttt 55465578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 56269022 - 56268918
Alignment:
Q  184 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 283  Q
    ||||||||||||||||||||||||||||||| | || ||||||  ||||||||||| ||||||||||||| |||||||| ||||||||| ||| ||||||    
T  56269022 cattggttaaaagaacaataatagaaatattatcttagaaagtggtaaaaagtgataaattcaacttttttaaagtttg-aaaattgtagtttccaatgt 56268924  T
Q  284 aaaact 289  Q
    ||||||    
T  56268923 aaaact 56268918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 298
Target Start/End: Original strand, 35498822 - 35498935
Alignment:
Q  184 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 283  Q
    ||||| |||| |||||||||||| |||||||||||||| ||    |||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  35498822 cattgattaagagaacaataataaaaatattgtgttgggaataggtaaaaagtgatggattcaactttttaaatgttt-aaaaattgtagttttcaatgt 35498920  T
Q  284 aaaactactattttt 298  Q
    ||||||| |||||||    
T  35498921 aaaactattattttt 35498935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 31463273 - 31463410
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    |||||||||||||||  |||||| |||||| |||| |||||| ||||||||| ||||||||||||||  ||||||||| | || ||||||| | ||||||    
T  31463273 aaatgctaaagagtgcccttggggcattggataaaggaacaaaaatagaaattttgtgttggaaagtggtaaaaagtggtcaagtcaacttgtaaaaagt 31463372  T
Q  260 ttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    || | |||||||  ||| ||| |||||||||||| ||||    
T  31463373 tt-acaaattgttgtttccaacgtaaaactactaatttt 31463410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 45257608 - 45257721
Alignment:
Q  185 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 284  Q
    ||||||||| ||||||| |||||||||||| |||||| ||||  | ||||||| ||||||||||||||||||||  | ||||||| | |||| ||||| |    
T  45257608 attggttaagagaacaaaaatagaaatattttgttgggaagtgttgaaaagtggtgaattcaactttttaaaag-ctaaaaaattattatttccaatgca 45257706  T
Q  285 aaactactatttttt 299  Q
    || ||||||||||||    
T  45257707 aagctactatttttt 45257721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 298
Target Start/End: Complemental strand, 3180655 - 3180515
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||||||||  ||| || ||||||||||  ||| || | |||||||||||||||| ||||   | ||||||| |||||||||||| | |||    
T  3180655 gggaaatgctaaagagtgcccttagggcattggttaatggaataaaattagaaatattgtgttgaaaaggggtgaaaagtggtgaattcaacttctgaaa 3180556  T
Q  257 agtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    | ||| ||||||||| |||| ||||| ||||| |||| ||||    
T  3180555 aattt-aaaaattgttatttccaatgcaaaacaactactttt 3180515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 51581433 - 51581510
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaa 234  Q
    ||||||||||||||||||  |||| | |||||| |||| |||||| ||||||||| |||||||||||||| |||||||    
T  51581433 gggaaatgctaaagagtgcccttgaggcattggataaaggaacaaaaatagaaattttgtgttggaaagtgataaaaa 51581510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 259
Target Start/End: Original strand, 13498094 - 13498196
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||||||||| ||||   |||||||||| |  | || |||||||||||||| ||||||| |  |||| |  |||||||| |||||||||||    
T  13498094 gggaaatgctaaagagtgtccttgatgcattggttaagatgataaaaatagaaatattgtattggaaaatagtaaagaacgatgaatttaactttttaaa 13498193  T
Q  257 agt 259  Q
    |||    
T  13498194 agt 13498196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 259
Target Start/End: Original strand, 31010404 - 31010506
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||||||||  |||||  |||||||||| |  | || |||||||| ||||| |||  || | ||||||||||| ||||| |||||||||||    
T  31010404 gggaaatgctaaagagtgcccttggagcattggttaagatgataaaaatagaaacattgtattgagaaatgataaaaagtgaagaatttaactttttaaa 31010503  T
Q  257 agt 259  Q
    |||    
T  31010504 agt 31010506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 35675168 - 35675270
Alignment:
Q  158 ggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 257  Q
    |||||| ||||||| ||  |||||| |||||||||| |  | || |||||||||||||| |||| || |  | |||||||||||||| ||||||||||||    
T  35675168 ggaaattctaaagactgcccttggggcattggttaagacgataaaaatagaaatattgtattgggaaatagtgaaaagtgatgaatttaactttttaaaa 35675267  T
Q  258 gtt 260  Q
    |||    
T  35675268 gtt 35675270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 32584542 - 32584599
Alignment:
Q  203 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 260  Q
    |||| |||||||||||| |||| |  |||||||| |||||||||||||||||||||||    
T  32584542 aatataaatattgtgttagaaaatggtaaaaagtaatgaattcaactttttaaaagtt 32584599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 4867756 - 4867848
Alignment:
Q  167 aaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    |||||||| ||||| | |||||||||| ||||||  |||| ||||| | ||||| |||||  | ||||||| ||||||||| |||||||||||    
T  4867756 aaagagtgctcttgtggcattggttaagagaacataaataaaaataatttgttgaaaagtggtgaaaagtgttgaattcaaatttttaaaagt 4867848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 27628969 - 27628862
Alignment:
Q  185 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 284  Q
    ||||| ||||||||||| |||| ||| ||| ||||||||| | || ||||||| | || ||||||| | |||||||| | |||||||  |||||||||||    
T  27628969 attggataaaagaacaaaaataaaaaaattttgttggaaaatgattaaaagtggtcaagtcaacttgtaaaaagttt-ataaattgttgttttcaatgta 27628871  T
Q  285 aaactacta 293  Q
    || ||||||    
T  27628870 aagctacta 27628862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 52341687 - 52341631
Alignment:
Q  203 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    |||||||||||| ||||||||| | || |||| ||||||||| ||||||||||||||    
T  52341687 aatagaaatattatgttggaaaatgatgaaaaatgatgaatttaactttttaaaagt 52341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 30618079 - 30617978
Alignment:
Q  159 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 258  Q
    ||||||||||||||||  ||| || |||||||||| || | ||  ||||||||||||  |||| || | || |||||  ||||||| |||||||||||||    
T  30618079 gaaatgctaaagagtgcccttagggcattggttaagaggataaacatagaaatattgcattgggaaatgatgaaaagcaatgaatttaactttttaaaag 30617980  T
Q  259 tt 260  Q
    ||    
T  30617979 tt 30617978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 35511203 - 35511260
Alignment:
Q  203 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 260  Q
    |||||||||||||| ||||||| |  | ||||||||||||||  ||||||||||||||    
T  35511203 aatagaaatattgtattggaaaatggtgaaaagtgatgaatttgactttttaaaagtt 35511260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 48604316 - 48604206
Alignment:
Q  185 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 284  Q
    |||| |||| ||||||| |||||||||| | ||||| |||||  | |||| || ||||||||||  | ||||| ||| |||| ||||||||| |||||||    
T  48604316 attgattaagagaacaaaaatagaaataatatgttg-aaagtggtgaaaa-tgttgaattcaacactctaaaaattt-aaaagttgtaatttccaatgta 48604220  T
Q  285 aaactactattttt 298  Q
    ||||||||||||||    
T  48604219 aaactactattttt 48604206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 16559991 - 16560113
Alignment:
Q  177 cttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaag--tgatgaattcaactttttaaaagtttgaaaaattgtaat 274  Q
    |||||| |||||| |||| ||| || ||||||||| |||||||||||| | |||||||   || | || ||||||| | |||||||| | |||||||  |    
T  16559991 cttggggcattggataaaggaataaaaatagaaattttgtgttggaaaatgataaaaaaaatggtcaagtcaacttgtaaaaagttt-ataaattgttgt 16560089  T
Q  275 tttcaatgtaaaactactattttt 298  Q
    || |||||||||||||||| ||||    
T  16560090 ttccaatgtaaaactactaatttt 16560113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 19934463 - 19934582
Alignment:
Q  178 ttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatttt 277  Q
    |||||| |||||  ||| |||||| |||| |||| |||| ||||||| | ||||||| || | || ||||||| | |||||||| | |||||||  ||||    
T  19934463 ttgggatattggagaaaggaacaaaaataaaaattttgtattggaaaatgataaaaaatggtcaagtcaacttgtaaaaagttt-ataaattgttgtttt 19934561  T
Q  278 caatgtaaaactactattttt 298  Q
     ||||||||||||||| ||||    
T  19934562 taatgtaaaactactaatttt 19934582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 20435795 - 20435867
Alignment:
Q  185 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 257  Q
    |||||||||||  | || |||||||| ||||| ||||||| || | |||||||| ||||| ||||||||||||    
T  20435795 attggttaaaaagataaaaatagaaacattgtcttggaaaattgtgaaaagtgaagaatttaactttttaaaa 20435867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 293
Target Start/End: Original strand, 40058195 - 40058304
Alignment:
Q  184 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaac-tttttaaaagtttgaaaaattgtaattttcaatg 282  Q
    |||||||||| |||||||||||| ||||||||| |||||||||  |||||||||||| || |||| ||||||||||||| |||||||||| ||||||||     
T  40058195 cattggttaagagaacaataataaaaatattgtcttggaaagtggtaaaaagtgatggatacaacttttttaaaagttt-aaaaattgtagttttcaata 40058293  T
Q  283 taaaactacta 293  Q
    |||||||||||    
T  40058294 taaaactacta 40058304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 6237600 - 6237489
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||| | ||  ||||||||||||||||||||||||| |||| ||||||  |||||| |||| || |||| || ||||||||||||||||||    
T  6237600 gggaaatgctaaataatgcccttgggacattggttaaaagaacaaaaataaaaatatcttgttgggaagtgatgaaaaatgctgaattcaactttttaaa 6237501  T
Q  257 agtttgaaaaatt 269  Q
    || ||||||||||    
T  6237500 ag-ttgaaaaatt 6237489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 36054962 - 36055062
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||||||||  ||||| |||||| |||| |||||| |||| |||| |||||||||||||| |||||||||| | || ||||||| | ||||||    
T  36054962 aaatgctaaagagtgtctttggggcattggataaaggaacaaaaataaaaattttgtgttggaaagtgataaaaagtggtcaaatcaacttgtaaaaagt 36055061  T
Q  260 t 260  Q
    |    
T  36055062 t 36055062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 7532917 - 7532814
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 256  Q
    ||||||||||||||||||||||| || ||||||||||  | | || |||||||||||||| ||||||| |  | |||||||||||||| |  ||||||||    
T  7532917 gggaaatgctaaagagtgttcttagggcattggttaaggggataaaaatagaaatattgtattggaaaatggtgaaaagtgatgaatttaggtttttaaa 7532818  T
Q  257 agtt 260  Q
    ||||    
T  7532817 agtt 7532814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 24067077 - 24066943
Alignment:
Q  163 tgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttg 262  Q
    ||||||||||||| |||||| |||| ||||| | ||||  |||| ||||| | |||||| || |  | ||||||| |||||||||| || |||||| ||     
T  24067077 tgctaaagagtgtccttggggcatttgttaagaaaacataaatataaataatttgttgggaaatggtgaaaagtgttgaattcaaccttctaaaag-tta 24066979  T
Q  263 aaaaattgtaattttcaatgtaaaactactattttt 298  Q
    |||| ||||||||||||||| |||||| ||| ||||    
T  24066978 aaaagttgtaattttcaatgcaaaactgctactttt 24066943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 31596401 - 31596500
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||||||||  ||||||||||| |||| |  | || |||||||||||||||||  ||| |  | |||| |||||||||  |||||||||||||    
T  31596401 aaatgctaaagagtgtcattgggacattgattaagatgataaaaatagaaatattgtgttaaaaaatggtgaaaaatgatgaattttactttttaaaagt 31596500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 24286589 - 24286535
Alignment:
Q  196 gaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 250  Q
    |||||| ||||||||| |||||||||||||| |||||||||| | || |||||||    
T  24286589 gaacaaaaatagaaattttgtgttggaaagtgataaaaagtggtcaagtcaactt 24286535  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 40452015 - 40451949
Alignment:
Q  184 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 250  Q
    |||||| |||| |||||| ||| ||||| |||||||||||||| ||||||||| || || |||||||    
T  40452015 cattggataaaggaacaaaaatggaaattttgtgttggaaagtgataaaaagtaatcaaatcaactt 40451949  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 43819646 - 43819568
Alignment:
Q  181 ggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||||| ||||||  |||||||||| | ||||| ||| | || |||| || ||||||||||||| |||||||    
T  43819646 ggacattggttaagagaacatgaatagaaataatttgttgaaaaatgatgaaaaatgttgaattcaactttctaaaagt 43819568  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 11799012 - 11799063
Alignment:
Q  236 tgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaac 288  Q
    ||||||||| || |||||||||||||| |||||||| |||||||||| |||||    
T  11799012 tgatgaattaaattttttaaaagtttg-aaaattgttattttcaatgcaaaac 11799063  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 19389333 - 19389389
Alignment:
Q  203 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||| || ||||||| || | ||||||||| |||| ||||||||||||||    
T  19389333 aatagaaatatagtattggaaaattgtgaaaagtgataaatttaactttttaaaagt 19389389  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 32522679 - 32522816
Alignment:
Q  159 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 258  Q
    ||||||||||| ||||  ||||| | |||||||||| |||||| |||||||||||| |||||| |||| ||||| | || |||||||||||||||||||     
T  32522679 gaaatgctaaatagtgcccttgg-atattggttaaaggaacaaaaatagaaatattttgttgggaagtgataaacattggtgaattcaactttttaaaa- 32522776  T
Q  259 tttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||| ||||||| | |||| ||||| |||||||||||||||    
T  32522777 tttaaaaaattattatttccaatgcaaaactactattttt 32522816  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 28782795 - 28782676
Alignment:
Q  178 ttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatttt 277  Q
    |||||| |||||||||||||| |  |||||||||| | ||||  ||| || ||||||||| |||||||||| ||||||||| |  |||| ||||||||||    
T  28782795 ttgggatattggttaaaagaatataaatagaaataatttgttaaaaaattgtaaaaagtgttgaattcaacattttaaaag-taaaaaagttgtaatttt 28782697  T
Q  278 caatgtaaaactactattttt 298  Q
    ||||  |||||||||| ||||    
T  28782696 caatacaaaactactactttt 28782676  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 10317351 - 10317221
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||| ||||||||| ||||| ||||   ||||| ||||||| |||||||| | ||||||| ||| | || ||||||| |||||||||||||  | ||||    
T  10317351 aaatgttaaagagtgctcttgagacacatgttaagagaacaaaaatagaaagaatgtgttgaaaaatgatgaaaagtgttgaattcaactttcaagaagt 10317252  T
Q  260 ttgaaaaattgtaattttcaatgtaaaactac 291  Q
    ||| ||| |||| |||||||||| ||||||||    
T  10317251 ttg-aaagttgtcattttcaatgcaaaactac 10317221  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 4293811 - 4293910
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||| |||||||||||||| || ||||||||||||| | || ||||| |||||||| |||  || | ||||| |||  |||||| ||||||||||||||    
T  4293811 aaatgttaaagagtgttcttagggcattggttaaaaggataaaaatagtaatattgtattgagaaatgataaagagtagtgaatttaactttttaaaagt 4293910  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 11594700 - 11594763
Alignment:
Q  203 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaa 266  Q
    |||||||||||||||||||||| |  | ||||||  |||||||||||||||| |||||| ||||    
T  11594700 aatagaaatattgtgttggaaaatggtgaaaagttgtgaattcaactttttataagtttaaaaa 11594763  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 19804490 - 19804567
Alignment:
Q  157 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaa 234  Q
    ||||||||||||| ||||  |||| | |||||  |||| |||||| ||||||||| |||||||| ||||| |||||||    
T  19804490 gggaaatgctaaatagtgcccttgtggcattgaataaaggaacaaaaatagaaattttgtgttgaaaagtgataaaaa 19804567  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 25017314 - 25017370
Alignment:
Q  203 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||||||||| || ||||||| || | ||||||||| |||| ||||||||||||||    
T  25017314 aatagaaatatagtattggaaaattgtgaaaagtgataaatttaactttttaaaagt 25017370  T

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Target: scaffold0169 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 8988 - 9118
Alignment:
Q  160 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 259  Q
    ||||| |||| |||| |||||||||||||||||||| ||||  |||||||||| | ||||| ||| |  | ||||||| ||||||||||||||||||||     
T  8988 aaatgttaaatagtgctcttgggacattggttaaaataacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaag- 9086  T
Q  260 ttgaaaaattgtaattttcaatgtaaaactac 291  Q
    |  ||||||||||| |||||||| ||||||||    
T  9087 tcaaaaaattgtaactttcaatgcaaaactac 9118  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 37361 - 37425
Alignment:
Q  152 aataggggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgt 216  Q
    |||| ||||||| ||||||||||||||| ||||||||| ||| || |  | ||||||||||||||    
T  37361 aataagggaaatactaaagagtgttcttaggacattggataagaggattaaaatagaaatattgt 37425  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 62629 - 62694
Alignment:
Q  231 aaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||| ||||||||||||| ||||||||  ||||||| ||||||| |||| |||| ||||| ||||    
T  62629 aaaagtgttgaattcaactttctaaaagtt--aaaaattataatttttaatgcaaaattactactttt 62694  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 69961 - 70026
Alignment:
Q  231 aaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 298  Q
    ||||||| ||||||||||||| ||||||||  ||||||| ||||||| |||| |||| ||||| ||||    
T  69961 aaaagtgttgaattcaactttctaaaagtt--aaaaattataatttttaatgcaaaattactactttt 70026  T

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