View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_2D_low_5 (Length: 266)

Name: NF8324_2D_low_5
Description: NF8324_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_2D_low_5
NF8324_2D_low_5
[»] chr8 (6 HSPs)
chr8 (16-246)||(14373823-14374057)
chr8 (159-228)||(18431686-18431755)
chr8 (87-179)||(23394769-23394864)
chr8 (78-188)||(45527277-45527388)
chr8 (75-122)||(24482012-24482059)
chr8 (135-179)||(23283674-23283718)
[»] scaffold0050 (1 HSPs)
scaffold0050 (146-188)||(11654-11696)
[»] chr4 (2 HSPs)
chr4 (128-233)||(28475661-28475767)
chr4 (157-229)||(50158145-50158216)
[»] chr1 (5 HSPs)
chr1 (71-188)||(20306701-20306822)
chr1 (128-223)||(8313417-8313514)
chr1 (138-188)||(1992419-1992471)
chr1 (138-188)||(30001779-30001831)
chr1 (138-188)||(40946516-40946568)
[»] chr6 (3 HSPs)
chr6 (138-188)||(7428522-7428574)
chr6 (138-188)||(16279117-16279169)
chr6 (138-188)||(28365722-28365774)
[»] chr5 (2 HSPs)
chr5 (73-114)||(24539656-24539697)
chr5 (73-180)||(38015902-38016014)
[»] chr3 (6 HSPs)
chr3 (157-246)||(21320397-21320485)
chr3 (70-189)||(32976438-32976561)
chr3 (70-188)||(20934964-20935086)
chr3 (70-115)||(17764195-17764240)
chr3 (70-115)||(19065515-19065560)
chr3 (138-188)||(42400420-42400472)
[»] chr2 (3 HSPs)
chr2 (138-188)||(19040694-19040746)
chr2 (138-188)||(39839125-39839177)
chr2 (73-129)||(3395422-3395478)
[»] chr7 (3 HSPs)
chr7 (128-233)||(38788969-38789075)
chr7 (147-201)||(29501661-29501715)
chr7 (138-188)||(43989679-43989731)
[»] scaffold1750 (1 HSPs)
scaffold1750 (138-246)||(321-430)
[»] scaffold1345 (1 HSPs)
scaffold1345 (138-188)||(1845-1897)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 14374057 - 14373823
Alignment:
Q  16 gacatcacatcattattcata--gtcttaaaacataaggtatatggatcatctcattttcaaagtcttaaaacattaggtatatgagtcatcttacttat 113  Q
    |||||||||||||||||||||  | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||     
T  14374057 gacatcacatcattattcatatagccttaaaacattaggtatatggatcatctcactttcaaagtcttaaaacattaggtatatgggtcatctcacttac 14373958  T
Q  114 atactgctcaacatctc---ttgtatccaatttaaaattttaactcacttgacacattaacatctctccactaagtgttgaactctccgtgtgcgtggtc 210  Q
    ||| |||||||||||||   || ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||    
T  14373957 atagtgctcaacatctcctcttatatccaatttaaaattttaactcacttgacacattaacattactccactaagtgttgaactctccgtgtgcgtgttc 14373858  T
Q  211 taccaccaagaaccactcccgctgcccccacaatgt 246  Q
     |||||| ||||||||| ||||| | ||||||||||    
T  14373857 caccacctagaaccacttccgct-ctcccacaatgt 14373823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 18431686 - 18431755
Alignment:
Q  159 ttgacacattaacatctctccactaagtgttgaactctccgtgtgcgtggtctaccaccaagaaccactc 228  Q
    ||||||||||| |||||||||| ||||||||  ||||| ||||  |||| || |||||||||||||||||    
T  18431686 ttgacacattatcatctctccattaagtgttagactctacgtgcccgtgatcgaccaccaagaaccactc 18431755  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 23394769 - 23394864
Alignment:
Q  87 attaggtatatgagtcatcttacttatatactgctcaacat---ctcttgtatccaatttaaaattttaactcacttgacacattaacatctctcc 179  Q
    |||||||||||  ||||| | | ||||||| ||||||| ||   |||||| ||||||| | ||||||||||||||||||||||| ||||| |||||    
T  23394769 attaggtatatcggtcatatcatttatatattgctcaatatttgctcttgcatccaatgtgaaattttaactcacttgacacatcaacatttctcc 23394864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 45527388 - 45527277
Alignment:
Q  78 tcttaaaacattaggtatatgagtcatcttacttatatactgctcaacat---ctcttgtatccaatttaaaattttaactcacttgacacattaacatc 174  Q
    |||||| |||||||||||| || |||||| ||||||||  || |||||||   |||||| ||||||| |||||||||||  ||||  ||||||||  |||    
T  45527388 tcttaagacattaggtatacgactcatctaacttatatgttggtcaacatctactcttgaatccaatataaaattttaa--cactgcacacattagaatc 45527291  T
Q  175 tctccactaagtgt 188  Q
    |||||| |||||||    
T  45527290 tctccattaagtgt 45527277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 24482059 - 24482012
Alignment:
Q  75 aagtcttaaaacattaggtatatgagtcatcttacttatatactgctc 122  Q
    ||||||||| ||||||| |||||||||||||| ||||||||| |||||    
T  24482059 aagtcttaagacattagatatatgagtcatctcacttatatattgctc 24482012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 23283718 - 23283674
Alignment:
Q  135 atccaatttaaaattttaactcacttgacacattaacatctctcc 179  Q
    ||||||| | ||| ||||||||||||||||||||||||| |||||    
T  23283718 atccaatgtgaaactttaactcacttgacacattaacatttctcc 23283674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 11654 - 11696
Alignment:
Q  146 aattttaactcacttgacacattaacatctctccactaagtgt 188  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  11654 aattttaactcactttacacattaacatctctccactaagtgt 11696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 28475661 - 28475767
Alignment:
Q  128 ctcttgtatccaatttaaaattttaact--cacttgacacattaacatctctccactaagtgttgaactctccgtgtgcgtggtctaccaccaagaacca 225  Q
    |||||| || |||| | |||||||||||  ||||| ||||||||||||||||||| |||||||   ||||||||||| |||| || |||||| |||| ||    
T  28475661 ctcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacctagaa-ca 28475759  T
Q  226 ctcccgct 233  Q
    ||||||||    
T  28475760 ctcccgct 28475767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 50158216 - 50158145
Alignment:
Q  157 acttgacacattaacatctctccactaagtgttgaactctccgtgtgcgtggtctaccaccaagaaccactcc 229  Q
    |||||||||||||||||||||||| |||||||  ||||||| |||  |||| || ||||||||||||||||||    
T  50158216 acttgacacattaacatctctccattaagtgtcaaactctctgtg-ccgtgatcgaccaccaagaaccactcc 50158145  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 20306701 - 20306822
Alignment:
Q  71 ttcaaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaa--catctcttgtatccaatttaaaattttaactcac--ttgacaca 166  Q
    |||||||||| ||| ||||| ||||||||||||||| ||||| ||  | ||||   |  || ||| || |||| ||||||||||||||||  ||||||||    
T  20306701 ttcaaagtctgaaagcattatgtatatgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgacaca 20306800  T
Q  167 ttaacatctctccactaagtgt 188  Q
    |||||||||||||| |||||||    
T  20306801 ttaacatctctccattaagtgt 20306822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 8313417 - 8313514
Alignment:
Q  128 ctcttgtatccaatttaaaattttaact--cacttgacacattaacatctctccactaagtgttgaactctccgtgtgcgtggtctaccaccaagaac 223  Q
    |||||| || |||| |||||||||||||  ||||| | ||||||||||||||||| |||||||   ||||||||||| |||| || |||||| |||||    
T  8313417 ctcttgcatacaatgtaaaattttaactttcacttaatacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacctagaac 8313514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 1992471 - 1992419
Alignment:
Q  138 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 188  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  1992471 caatataaaattttaactcacacttgacacattaacatctctccattaagtgt 1992419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 30001779 - 30001831
Alignment:
Q  138 caatttaaaattttaact--cacttgacacattaacatctctccactaagtgt 188  Q
    |||| |||||||||||||  ||||||||||||||||||||||||| |||||||    
T  30001779 caatataaaattttaacttacacttgacacattaacatctctccattaagtgt 30001831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 40946568 - 40946516
Alignment:
Q  138 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 188  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  40946568 caatataaaattttaactcacacttgacacattaacatctctccattaagtgt 40946516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 7428522 - 7428574
Alignment:
Q  138 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 188  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  7428522 caatataaaattttaactcacacttgacacattaacatctctccattaagtgt 7428574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 16279117 - 16279169
Alignment:
Q  138 caatttaaaattttaact--cacttgacacattaacatctctccactaagtgt 188  Q
    |||| |||||||||||||  |||||||||||||||||||| |||| |||||||    
T  16279117 caatataaaattttaacttacacttgacacattaacatctgtccattaagtgt 16279169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 28365774 - 28365722
Alignment:
Q  138 caatttaaaattttaact--cacttgacacattaacatctctccactaagtgt 188  Q
    |||| |||||||||||||  |||||||||||||||||||| |||| |||||||    
T  28365774 caatataaaattttaacttacacttgacacattaacatctgtccattaagtgt 28365722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 24539697 - 24539656
Alignment:
Q  73 caaagtcttaaaacattaggtatatgagtcatcttacttata 114  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  24539697 caaagtcttaaagtattaggtatatgagtcatcttacttata 24539656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 38015902 - 38016014
Alignment:
Q  73 caaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaacat---ctcttgtatccaatttaaaattttaact--cacttgacacat 167  Q
    |||| ||||||  |||||| |||||||||||||| ||||||||  ||||||||||   || ||| || |||| |   |||||||||  ||||||||||||    
T  38015902 caaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 38016001  T
Q  168 taacatctctcca 180  Q
    |||||||||||||    
T  38016002 taacatctctcca 38016014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 21320485 - 21320397
Alignment:
Q  157 acttgacacattaacatctctccactaagtgttgaactctccgtgtgcgtggtctaccaccaagaaccactcccgctgcccccacaatgt 246  Q
    |||||||| |||||||||| |||| ||||||||||||||||  ||||  || || |||||||| ||||||||  ||| ||||||||||||    
T  21320485 acttgacaaattaacatctatccattaagtgttgaactctctctgtgtatgatccaccaccaaaaaccactcatgct-cccccacaatgt 21320397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 32976438 - 32976561
Alignment:
Q  70 tttcaaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaa--catctcttgtatccaatttaaaattttaactcac--ttgacac 165  Q
    ||||||||||| ||| ||||| ||||||||||||||| ||||| ||  | ||||   |  || ||| || |||| ||||||||||||||||  |||| ||    
T  32976438 tttcaaagtctgaaagcattatgtatatgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgatac 32976537  T
Q  166 attaacatctctccactaagtgtt 189  Q
    ||||||||||||||| ||||||||    
T  32976538 attaacatctctccattaagtgtt 32976561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 20934964 - 20935086
Alignment:
Q  70 tttcaaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaacatctc---ttgtatccaatttaaaattttaactcact--tgaca 164  Q
    ||||||||||  ||| ||||| ||||||||||||||| ||||| ||  | |||| |||||    ||| || |||| ||||||||||||||||   |||||    
T  20934964 tttcaaagtccgaaagcattatgtatatgagtcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacctgaca 20935062  T
Q  165 cattaacatctctccactaagtgt 188  Q
    |||||||||||||||| |||||||    
T  20935063 cattaacatctctccattaagtgt 20935086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 17764240 - 17764195
Alignment:
Q  70 tttcaaagtcttaaaacattaggtatatgagtcatcttacttatat 115  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||||    
T  17764240 tttcaaagtcttaaagcattatgtatatgagtaatctcacttatat 17764195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 19065560 - 19065515
Alignment:
Q  70 tttcaaagtcttaaaacattaggtatatgagtcatcttacttatat 115  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||||    
T  19065560 tttcaaagtcttaaagcattatgtatatgagtaatctcacttatat 19065515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 42400420 - 42400472
Alignment:
Q  138 caatttaaaattttaactcact--tgacacattaacatctctccactaagtgt 188  Q
    |||| ||||||||||||||||   ||||||||||||||||||||| |||||||    
T  42400420 caatataaaattttaactcacacgtgacacattaacatctctccattaagtgt 42400472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 19040746 - 19040694
Alignment:
Q  138 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 188  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  19040746 caatataaaattttaactcacacttgacacattaacatctctccattaagtgt 19040694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 39839125 - 39839177
Alignment:
Q  138 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 188  Q
    |||| ||||||||||||||||  |||||||||||||||||||||  |||||||    
T  39839125 caatataaaattttaactcacacttgacacattaacatctctccgttaagtgt 39839177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 3395422 - 3395478
Alignment:
Q  73 caaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaacatct 129  Q
    |||| |||||| ||||||| |||||||||||||| ||||||||  | ||||||||||    
T  3395422 caaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatct 3395478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 38788969 - 38789075
Alignment:
Q  128 ctcttgtatccaatttaaaattttaact--cacttgacacattaacatctctccactaagtgttgaactctccgtgtgcgtggtctaccaccaagaacca 225  Q
    |||||| || |||| | |||||||||||  ||||| ||||||||||||||||||| |||||||   |||||||||||  ||| || |||||| |||| ||    
T  38788969 ctcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgtttgtgatccaccacctagaa-ca 38789067  T
Q  226 ctcccgct 233  Q
    ||||||||    
T  38789068 ctcccgct 38789075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 29501661 - 29501715
Alignment:
Q  147 attttaactcacttgacacattaacatctctccactaagtgttgaactctccgtg 201  Q
    |||||||||||||||| ||| ||||||||||| | ||||||| ||||||| ||||    
T  29501661 attttaactcacttgaaacactaacatctctctattaagtgtcgaactcttcgtg 29501715  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 43989731 - 43989679
Alignment:
Q  138 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 188  Q
    |||| ||||||||||||||||  |||||||||||||||||||| | |||||||    
T  43989731 caatataaaattttaactcacacttgacacattaacatctctcaattaagtgt 43989679  T

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Target: scaffold1750 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 321 - 430
Alignment:
Q  138 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgttgaactctccgtgtgcgtggtctaccaccaagaaccactcccgctgc 235  Q
    |||| ||||||||||||||||  ||| |||||||||||||||||| |||||||  |  |||  |||| ||| ||| |||||||||||| |||| |||| |    
T  321 caatataaaattttaactcacacttgccacattaacatctctccattaagtgtcaagatctttgtgttcgtagtccaccaccaagaacaactctcgct-c 419  T
Q  236 ccccacaatgt 246  Q
    || ||||||||    
T  420 cctcacaatgt 430  T

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Target: scaffold1345 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 1897 - 1845
Alignment:
Q  138 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 188  Q
    |||| ||||||||||||||||  |||||||||||||||||||| | |||||||    
T  1897 caatataaaattttaactcacacttgacacattaacatctctcaattaagtgt 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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