View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_high_1 (Length: 767)

Name: NF8324_high_1
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_high_1
NF8324_high_1
[»] chr3 (1 HSPs)
chr3 (19-756)||(40184268-40185005)


Alignment Details
Target: chr3 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 19 - 756
Target Start/End: Complemental strand, 40185005 - 40184268
Alignment:
Q  19 ttccaaccatatactacgacgctgtttacacaaccaccaccaaaatcaatgataggattcaacttccactgttacctaatcacctcacagaaacacagtc 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  40185005 ttccaaccatatactacgacgccgtttacacaaccaccaccaaaatcaatgataggattcaacttccactgttacctaatcacctcactcaaacacagtc 40184906  T
Q  119 tcaactttcaatcaaagataaaccaagtttatccagcgacggtgaatatttaatctacgtgtcaacccacgaggatcccggtgtgcaacgtgtcagctgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184905 tcaactttcaatcaaagataaaccaagtttatccagcgacggtcaatatttaatctacgtgtcaacccacgaggatcccggtgtgcaacgtgtcagctgg 40184806  T
Q  219 actgccgtttattccacccatcttaaatcgggtaacacccgaagactcactccatacggcgtcgctgatttcagcccagccgtatctcctaccgggaaat 318  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184805 accgccgtttattccacccatcttaaatcgggtaacacccgaagactcactccatacggcgtcgctgatttcagcccagccgtatctcctaccgggaaat 40184706  T
Q  319 ggacagcagttgcttcttacggcggtaatggttggtccggtgaagtagaggatctcactacagacatctacgttttcctcactcacgacggaactcacag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184705 ggacagcagttgcttcttacggcggtaatggttggtccggtgaagtagaggatctcactacagacatctacgttttcctcactcacgacggaactcacag 40184606  T
Q  419 atacaaagtagttgatcacggtggctggccaagttgggttgatgatcggactatttactttcaccggagaggaaacgacggttggttgagtatttacaga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184605 atacaaagtagttgatcacggtggctggccaagttgggttgatgatcggactatttactttcaccggagaggaaacgacggttggttgagtatttacaga 40184506  T
Q  519 gcaattctcaccactgattcttcttactctgttctcatcgaacgagttaccccaccgggtttacacgtattcacaccggcaacttcaccgggaaacaaca 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184505 gcaattctcaccactgattcttcttactctgttctcatcgaacgagttaccccaccgggtttacacgtattcacaccggcaacttcaccgggaaacaaca 40184406  T
Q  619 aattcatcgccgtcgcaacgagaagacctggctctaacttccgtcacattgaattattcgacctggttaacaacgagttcaaggagttaactcgtttcgt 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184405 aattcatcgccgtcgcaacgagaagacctggctctaacttccgtcacattgaattattcgacctggttaacaacgagttcaaggagttaactcgtttcgt 40184306  T
Q  719 ctcacctaatactcaccatctcaacccgttcatctcac 756  Q
    |||||||||||||||||||||||||||||| |||||||    
T  40184305 ctcacctaatactcaccatctcaacccgtttatctcac 40184268  T

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