View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_high_11 (Length: 300)
Name: NF8324_high_11
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 52713833 - 52714106
Alignment:
| Q |
19 |
taaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713833 |
taaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaa |
52713932 |
T |
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| Q |
119 |
ctaggaaacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713933 |
ctaggaaacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccat |
52714032 |
T |
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| Q |
219 |
ttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggcttttcatctca |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52714033 |
ttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggtgttgggcttttcatctca |
52714106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 52722855 - 52723128
Alignment:
| Q |
19 |
taaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaa |
118 |
Q |
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||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
52722855 |
taaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaa |
52722954 |
T |
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| Q |
119 |
ctaggaaacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccat |
218 |
Q |
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||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
52722955 |
ctaggaaacaagttcgaaatcccaacaggttctgtccctgtctttgctgccatcaacggcctcatacttgtacctctctacgagagattaataatcccat |
52723054 |
T |
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| Q |
219 |
ttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggcttttcatctca |
292 |
Q |
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||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
52723055 |
ttctccgcaaatttacaggccatcaccgtggcatcacatcgttacaacgaatgggtgttgggctttttatctca |
52723128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 52699559 - 52699822
Alignment:
| Q |
19 |
taaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaa |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||| |||||||||||| |||||||| | ||| |
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| T |
52699559 |
taaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttctaagtcaagccaaaatcatgaacaaaaag |
52699658 |
T |
|
| Q |
119 |
ctaggaaacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccat |
218 |
Q |
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||||| || ||||||||||| | || ||||| |||| |||| ||||| || | | ||||||||| |||| || || |||||||| ||||||||| |
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| T |
52699659 |
ctagg---taaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaa |
52699755 |
T |
|
| Q |
219 |
ttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggctttt |
285 |
Q |
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||||||| || |||||||||||| ||| ||||||||||| |||||||||||||| ||||| ||||| |
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| T |
52699756 |
ttctccgaaaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttt |
52699822 |
T |
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