View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_high_14 (Length: 275)
Name: NF8324_high_14
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 27196470 - 27196726
Alignment:
| Q |
9 |
tggtgttcatgttgtttatgtcggttgcaaaaaagaggtgaaatttcttcatttcannnnnnnnnnnaagttttgattgaaatgttgattttgtacttat |
108 |
Q |
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| T |
27196470 |
tggtgttccggttgtttatgtcggttgcaaaaaagaggtgaaatttcttcatttcattttttttt--aagttttgattgaaatgttgattttgtacttat |
27196567 |
T |
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| Q |
109 |
ttactgagaaatttagttagtcatttgaatatgatttgctttaattgaagctctatagcaaagacacttctaattgaagatgtgtctcactgtctgacac |
208 |
Q |
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| T |
27196568 |
ttactgagaaatttagttagtcatttgaatatgatatgctttaattgaagctctatagcaccgacacttctaattgaagatgcgtctcactgtctgacac |
27196667 |
T |
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| Q |
209 |
atgacagtgtccaacaacaacatacgtgattacattgaattatatcattttatgatgtc |
267 |
Q |
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| T |
27196668 |
atgacagtgtccaacaacaacatacgtgattacattgaattatatcattttatgatgtc |
27196726 |
T |
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