View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_high_16 (Length: 259)
Name: NF8324_high_16
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_high_16 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8415191 - 8415427
Alignment:
| Q |
1 |
ctcgcactttctaaatcaaaatattatttttggattgcacttcagagaaaaacattaagaacaaaaataaaatagcgattattatattctatataactag |
100 |
Q |
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| T |
8415191 |
ctcgcactttctaaatcaaaatattatttttggattgcacgccagagaaaaacattaagaacaaaaataaaatagagattattatattctatataactag |
8415290 |
T |
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| Q |
101 |
ccagatcaagtatctacatcagaaccataacaattagacctaatctcaataatagagaggattgaagaaaagagatttaatgttgaagttgattcctcaa |
200 |
Q |
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| T |
8415291 |
ccagatcaagtatctacatcagaaccataacaattagacttaatctcaataatagagatgattgaagaaaagagatttaatgttgaagttgattcctcca |
8415390 |
T |
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| Q |
201 |
tctcctttgccttggctttctccttccatatgtgtgt |
237 |
Q |
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| T |
8415391 |
tctcctttgccttggctttctccttccatatgtgtgt |
8415427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 8437549 - 8437598
Alignment:
| Q |
167 |
gaaaagagatttaatgttgaagttgattcctcaatctcctttgccttggc |
216 |
Q |
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| T |
8437549 |
gaaaatagatttaatgttgaagttgcttccttgatctccttcgccttggc |
8437598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 21390 - 21456
Alignment:
| Q |
4 |
gcactttctaaatcaaaatattatttttggattgcacttcagagaaaaacattaagaacaaaaataaa |
71 |
Q |
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| T |
21390 |
gcactttctaaatcaaaatatcatttttggattgcatatca-aaaaaagcattaagaacaaaaataaa |
21456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 12212118 - 12212084
Alignment:
| Q |
5 |
cactttctaaatcaaaatattatttttggattgca |
39 |
Q |
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| T |
12212118 |
cactttctaaatcaaaatatcatttttggattgca |
12212084 |
T |
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