View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_high_3 (Length: 527)
Name: NF8324_high_3
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 6486254 - 6485756
Alignment:
| Q |
19 |
atttattctttagccgcttccggtgacttattatacaccggttcagacagcaagaacattcgtgtgtggaagaatcttcaagaatattgcggattcaaat |
118 |
Q |
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| T |
6486254 |
atttattctttagccgcatccggtgacttattatacaccggctcagacagcaagaacattcgtgtgtggaagaatcttcaagaatattgcggattcaaat |
6486155 |
T |
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| Q |
119 |
ccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggtaaaatccgtgtttggaaagtttctctcaagaa |
218 |
Q |
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| T |
6486154 |
ccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggtaaaatccgtgtttggaaagtctctctcaagaa |
6486055 |
T |
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| Q |
219 |
ccctagcgttcacaaacgtgccggaacattaccaacactcaaagacatcttcaaaagctcgattaaaccaagcaattatgtcgaggttagaaaacaccga |
318 |
Q |
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| T |
6486054 |
ccctagcgttcacaaacgtgctggaacattaccaacactcaaagacatcttcaaaagctcaattaaaccaagcaattatgtcgaggttagaaaacaccga |
6485955 |
T |
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| Q |
319 |
actgcattatggatcaaacattcggatgcagtttcatgcctaagcctttctccagacaaaacctacctctactctgcttcatgggacagaaccgtcaaag |
418 |
Q |
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| T |
6485954 |
actgcattatggatcaaacattcggatgcagtttcatgcctaagtctttctccagacaaaacctacctctactctgcttcatgggacagaaccgtcaaag |
6485855 |
T |
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| Q |
419 |
tttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccgtcgtttgtggaaacgacggaattgttttctctg |
517 |
Q |
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| T |
6485854 |
tttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacgccgtcgtttgtggaaacgacggaattgttttctctg |
6485756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 6917703 - 6917655
Alignment:
| Q |
46 |
ttattatacaccggttcagacagcaagaacattcgtgtgtggaagaatc |
94 |
Q |
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| T |
6917703 |
ttattatacaccggttctgatagtaaaaacattcgtgtttggaagaatc |
6917655 |
T |
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