View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_high_5 (Length: 449)

Name: NF8324_high_5
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_high_5
NF8324_high_5
[»] chr6 (10 HSPs)
chr6 (1-449)||(17168889-17169339)
chr6 (1-299)||(17150489-17150787)
chr6 (1-297)||(17137190-17137486)
chr6 (399-446)||(2140495-2140542)
chr6 (411-449)||(13211307-13211345)
chr6 (403-445)||(6299511-6299553)
chr6 (403-445)||(6306321-6306363)
chr6 (403-436)||(28715303-28715336)
chr6 (389-437)||(29049892-29049940)
chr6 (403-439)||(34541768-34541804)
[»] chr5 (21 HSPs)
chr5 (403-447)||(38749581-38749625)
chr5 (400-449)||(13287414-13287463)
chr5 (403-438)||(4344748-4344783)
chr5 (403-438)||(11596473-11596508)
chr5 (403-438)||(24906319-24906354)
chr5 (404-447)||(28296325-28296368)
chr5 (403-438)||(39342460-39342495)
chr5 (403-445)||(8420026-8420068)
chr5 (399-437)||(9449476-9449514)
chr5 (403-437)||(16881143-16881177)
chr5 (403-445)||(18607115-18607157)
chr5 (404-449)||(16864013-16864058)
chr5 (403-436)||(31084331-31084364)
chr5 (411-447)||(4344868-4344904)
chr5 (393-437)||(5399927-5399970)
chr5 (407-439)||(16434404-16434436)
chr5 (325-353)||(26312845-26312873)
chr5 (403-447)||(30080519-30080563)
chr5 (404-444)||(32428945-32428985)
chr5 (403-439)||(39651224-39651260)
chr5 (403-447)||(43001797-43001841)
[»] chr4 (15 HSPs)
chr4 (403-447)||(5654609-5654653)
chr4 (403-447)||(10546145-10546189)
chr4 (403-438)||(18513259-18513294)
chr4 (395-434)||(26276019-26276058)
chr4 (403-449)||(15969348-15969394)
chr4 (406-444)||(43188612-43188650)
chr4 (325-354)||(3947716-3947745)
chr4 (403-436)||(14465093-14465126)
chr4 (403-444)||(19230327-19230368)
chr4 (403-436)||(21945511-21945544)
chr4 (386-434)||(2234260-2234308)
chr4 (403-443)||(5176985-5177025)
chr4 (405-449)||(10634985-10635029)
chr4 (403-447)||(31552475-31552519)
chr4 (398-438)||(32910557-32910597)
[»] chr3 (10 HSPs)
chr3 (403-438)||(12704675-12704710)
chr3 (403-437)||(41319328-41319362)
chr3 (403-439)||(11093575-11093611)
chr3 (387-445)||(2408657-2408714)
chr3 (403-445)||(52369774-52369816)
chr3 (395-444)||(11251978-11252027)
chr3 (406-438)||(9210846-9210878)
chr3 (403-435)||(20503474-20503506)
chr3 (403-439)||(20691324-20691360)
chr3 (407-439)||(25908861-25908893)
[»] chr2 (11 HSPs)
chr2 (399-438)||(30563415-30563454)
chr2 (403-438)||(18570978-18571013)
chr2 (408-447)||(25317134-25317173)
chr2 (403-438)||(40681988-40682023)
chr2 (395-445)||(4332925-4332975)
chr2 (403-449)||(19613631-19613677)
chr2 (411-445)||(24011035-24011069)
chr2 (404-449)||(9626937-9626981)
chr2 (403-444)||(10250726-10250767)
chr2 (403-436)||(12668441-12668474)
chr2 (408-437)||(24894492-24894521)
[»] chr7 (15 HSPs)
chr7 (403-445)||(28943432-28943474)
chr7 (402-440)||(30606081-30606119)
chr7 (377-440)||(44172880-44172945)
chr7 (402-438)||(44020981-44021017)
chr7 (389-436)||(11700811-11700858)
chr7 (403-438)||(38134424-38134459)
chr7 (403-444)||(36013816-36013858)
chr7 (403-436)||(7438714-7438747)
chr7 (403-436)||(35861972-35862005)
chr7 (403-431)||(7241012-7241040)
chr7 (406-438)||(9783397-9783429)
chr7 (403-435)||(19930959-19930991)
chr7 (403-439)||(21247754-21247790)
chr7 (403-435)||(27980805-27980837)
chr7 (325-365)||(38134350-38134390)
[»] chr8 (11 HSPs)
chr8 (388-436)||(6211442-6211488)
chr8 (406-449)||(5307056-5307098)
chr8 (377-435)||(9382981-9383039)
chr8 (400-446)||(28745496-28745542)
chr8 (403-437)||(34201064-34201098)
chr8 (403-436)||(29198497-29198530)
chr8 (404-449)||(34739080-34739125)
chr8 (405-448)||(2925116-2925160)
chr8 (403-439)||(3508057-3508093)
chr8 (400-436)||(29447125-29447161)
chr8 (400-436)||(41831955-41831991)
[»] chr1 (12 HSPs)
chr1 (403-436)||(30847738-30847771)
chr1 (403-438)||(11571591-11571626)
chr1 (403-438)||(40747791-40747826)
chr1 (403-437)||(3921674-3921708)
chr1 (403-449)||(7988469-7988515)
chr1 (403-449)||(24462288-24462334)
chr1 (403-449)||(38078679-38078725)
chr1 (399-436)||(17754319-17754356)
chr1 (403-439)||(498415-498450)
chr1 (325-353)||(7918169-7918197)
chr1 (402-438)||(42325566-42325602)
chr1 (403-443)||(42386415-42386454)
[»] scaffold1528 (1 HSPs)
scaffold1528 (399-436)||(1043-1080)
[»] scaffold0571 (1 HSPs)
scaffold0571 (406-439)||(7695-7728)
[»] scaffold0037 (1 HSPs)
scaffold0037 (403-443)||(102906-102946)


Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 17169339 - 17168889
Alignment:
Q  1 tactttacatcttcatcactgtatttgattggggagtgattggtttagcaatggcaagtaatatctcaggatggatattttctattgcattggtaatcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17169339 tactttacatcttcatcactgtatttgattggggagtgattggtttagcaatggcaagtaatatctcaggatggatattttctattgcattggtaatcta 17169240  T
Q  101 tgccattggttggtgtaaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttaccaaacttagttttggttcatctgtaatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17169239 tgccattggttggtgtaaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttaccaaacttagtcttggttcatctgtaatg 17169140  T
Q  201 atctgtttagaacaatggtatactgcttgcattatacttcttgctgggcatcttgataatcctgtgattgctgttggttccttttcgatttggtaagaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17169139 atctgtttagaacaatggtatactgcttgcattatacttcttgctggtcatcttgataatcctgtgattgctgttggttccttttcgatttggtaagaat 17169040  T
Q  301 aagatgataagctacgaatcacatactcctcggattaggtgtgtcctggtgtcgaatacttatcgtgtttgatacagacaccaatacgacacaaacac-- 398  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||      
T  17169039 aagatgataagctacgaaacacatactcctcggattaggtgtgtcctggtgtcgaatacttatcatgtttgatacagacaccaatacgacacaaacacat 17168940  T
Q  399 atagttacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17168939 atagttacattgaattatgtcattttttcaaattattatcaatgtcgacgt 17168889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 17150787 - 17150489
Alignment:
Q  1 tactttacatcttcatcactgtatttgattggggagtgattggtttagcaatggcaagtaatatctcaggatggatattttctattgcattggtaatcta 100  Q
    ||||||| ||||||||  ||||||||||||||||| | | ||| ||||| ||||||||||||||| ||||||||  |||| | |||||     |||| ||    
T  17150787 tactttatatcttcatttctgtatttgattggggaataactggcttagctatggcaagtaatatcacaggatggggatttgcaattgctcaactaattta 17150688  T
Q  101 tgccattggttggtgtaaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttaccaaacttagttttggttcatctgtaatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||    
T  17150687 tgccattggttggtgtaaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttactaagctaagttttggttcatctgtaatg 17150588  T
Q  201 atctgtttagaacaatggtatactgcttgcattatacttcttgctgggcatcttgataatcctgtgattgctgttggttccttttcgatttggtaagaa 299  Q
    || ||||||||||| ||||||||| |   |||||| |||||||||||  ||||||||||||||||||||||| ||||||| | ||| ||||||||||||    
T  17150587 atttgtttagaacagtggtatactacaatcattatccttcttgctggctatcttgataatcctgtgattgctcttggttcatattcaatttggtaagaa 17150489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 17137486 - 17137190
Alignment:
Q  1 tactttacatcttcatcactgtatttgattggggagtgattggtttagcaatggcaagtaatatctcaggatggatattttctattgcattggtaatcta 100  Q
    ||||||||||||||||  |||||||||| |||||| |  |||| |||||  |||||||||||||| ||||||||  ||||||||||||  | ||||| ||    
T  17137486 tactttacatcttcatttctgtatttgagtggggaatatttggcttagctctggcaagtaatatcacaggatggggattttctattgctctagtaattta 17137387  T
Q  101 tgccattggttggtgtaaagaaggatggaatggattgtcttggatggcatttagagaattatgggaatttaccaaacttagttttggttcatctgtaatg 200  Q
    || |||||||||||  |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| | ||| ||| |||||||||||| ||||    
T  17137386 tgtcattggttggtccaaagaaggatggaatggattatcttggatggcatttagggaactatgggaatttacaatactaagtcttggttcatctggaatg 17137287  T
Q  201 atctgtttagaacaatggtatactgcttgcattatacttcttgctgggcatcttgataatcctgtgattgctgttggttccttttcgatttggtaag 297  Q
    || ||||||||||| ||||||| || ||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  17137286 atttgtttagaacagtggtatagtgtttgcattatccttcttgctggtcaccttgataatcctgtgattgctcttggttcctattcaatttggtaag 17137190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 2140495 - 2140542
Alignment:
Q  399 atagttacattgaattatgtcattttttcaaattattatcaatgtcga 446  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  2140495 atagttacattgaattatgtcattttctcaaattattatcaatgtcga 2140542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 13211307 - 13211345
Alignment:
Q  411 aattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  13211307 aattatgtcattttctcaaattattatcaatgtcgacgt 13211345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 6299553 - 6299511
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcg 445  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||    
T  6299553 ttacattgaattatatcattttctcaaattattatccatgtcg 6299511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 6306363 - 6306321
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcg 445  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||    
T  6306363 ttacattgaattatatcattttctcaaattattatccatgtcg 6306321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 28715336 - 28715303
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    ||||| ||||||||||||||||||||||||||||    
T  28715336 ttacactgaattatgtcattttttcaaattatta 28715303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 29049940 - 29049892
Alignment:
Q  389 acacaaacacatagttacattgaattatgtcattttttcaaattattat 437  Q
    |||| |||||||  |||||||||||||||| ||||| ||||||||||||    
T  29049940 acaccaacacatgattacattgaattatgtaattttctcaaattattat 29049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 34541768 - 34541804
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatca 439  Q
    |||||||||||| |||||||||||| |||||||||||    
T  34541768 ttacattgaattttgtcattttttctaattattatca 34541804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 38749581 - 38749625
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgac 447  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  38749581 ttacattgaattatgtcattttttcaaattattatcggtgtcgac 38749625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 13287414 - 13287463
Alignment:
Q  400 tagttacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||| |||||||||| |||||||||||||||||||  |||||||||    
T  13287414 tagttacactgaattatgtgattttttcaaattattatctgtgtcgacgt 13287463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 4344783 - 4344748
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4344783 ttacactgaattatgtcattttttcaaattattatc 4344748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 11596473 - 11596508
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||||||| |||||||||||||    
T  11596473 ttacattgaattatgtcattttctcaaattattatc 11596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 24906319 - 24906354
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24906319 ttacactgaattatgtcattttttcaaattattatc 24906354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 28296368 - 28296325
Alignment:
Q  404 tacattgaattatgtcattttttcaaattattatcaatgtcgac 447  Q
    ||||||||||||||||||||| |||||||||||||  |||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcgac 28296325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 39342495 - 39342460
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||| |||||||||||||||||    
T  39342495 ttacattgaattatgtcaatttttcaaattattatc 39342460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 8420068 - 8420026
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcg 445  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  8420068 ttacattgaattatgttattttttcaaattattagctatgtcg 8420026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 9449514 - 9449476
Alignment:
Q  399 atagttacattgaattatgtcattttttcaaattattat 437  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  9449514 atagttacattgaattatgtgattttctcaaattattat 9449476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 16881177 - 16881143
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattat 437  Q
    ||||||| |||||||||||||||||||||||||||    
T  16881177 ttacattaaattatgtcattttttcaaattattat 16881143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 18607115 - 18607157
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcg 445  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||    
T  18607115 ttacattgaattatgttattttctcaaattattatccatgtcg 18607157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 449
Target Start/End: Complemental strand, 16864058 - 16864013
Alignment:
Q  404 tacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    ||||||||||||||||||||| ||  ||||||||||||||| ||||    
T  16864058 tacattgaattatgtcattttctcgcattattatcaatgtcaacgt 16864013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 31084364 - 31084331
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    |||||||||||||||| |||||||||||||||||    
T  31084364 ttacattgaattatgtgattttttcaaattatta 31084331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 4344904 - 4344868
Alignment:
Q  411 aattatgtcattttttcaaattattatcaatgtcgac 447  Q
    ||||||||||||||||||||||||||| | |||||||    
T  4344904 aattatgtcattttttcaaattattattagtgtcgac 4344868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 5399970 - 5399927
Alignment:
Q  393 aaacacatagttacattgaattatgtcattttttcaaattattat 437  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||    
T  5399970 aaacatataattacattgaattatgtcatttttt-aaattattat 5399927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 16434404 - 16434436
Alignment:
Q  407 attgaattatgtcattttttcaaattattatca 439  Q
    |||||||||||| ||||||||||||||||||||    
T  16434404 attgaattatgttattttttcaaattattatca 16434436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 26312873 - 26312845
Alignment:
Q  325 actcctcggattaggtgtgtcctggtgtc 353  Q
    |||||||||||||||||||||||||||||    
T  26312873 actcctcggattaggtgtgtcctggtgtc 26312845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 30080519 - 30080563
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgac 447  Q
    |||||||||||||||||||||| ||||| | |||||| |||||||    
T  30080519 ttacattgaattatgtcattttctcaaaattttatcagtgtcgac 30080563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 32428945 - 32428985
Alignment:
Q  404 tacattgaattatgtcattttttcaaattattatcaatgtc 444  Q
    ||||||||||||||||| ||| |||||||||||||| ||||    
T  32428945 tacattgaattatgtcactttctcaaattattatcagtgtc 32428985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 39651260 - 39651224
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatca 439  Q
    ||||||||||||||||||||||| | |||||||||||    
T  39651260 ttacattgaattatgtcatttttacgaattattatca 39651224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 43001841 - 43001797
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgac 447  Q
    ||||| |||||||||| ||||||||||||||||| || |||||||    
T  43001841 ttacactgaattatgtaattttttcaaattattagcagtgtcgac 43001797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 5654609 - 5654653
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgac 447  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattatcagtgtcgac 5654653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 10546189 - 10546145
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgac 447  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  10546189 ttacattgaattatgtcattttctcaaattattatcattgtcgac 10546145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 18513259 - 18513294
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||||||| |||||||||||||    
T  18513259 ttacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 434
Target Start/End: Original strand, 26276019 - 26276058
Alignment:
Q  395 acacatagttacattgaattatgtcattttttcaaattat 434  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  26276019 acacataattacattgaattatgtcattttctcaaattat 26276058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 15969394 - 15969348
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    ||||||| |||||||| ||||||| |||||||||||| |||||||||    
T  15969394 ttacattaaattatgttattttttaaaattattatcagtgtcgacgt 15969348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 43188650 - 43188612
Alignment:
Q  406 cattgaattatgtcattttttcaaattattatcaatgtc 444  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  43188650 cattgaattatgtcattttctcaaattattatcagtgtc 43188612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 3947716 - 3947745
Alignment:
Q  325 actcctcggattaggtgtgtcctggtgtcg 354  Q
    ||||||||||||||||||||||||||||||    
T  3947716 actcctcggattaggtgtgtcctggtgtcg 3947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 14465093 - 14465126
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    |||||||||||||||| |||||||||||||||||    
T  14465093 ttacattgaattatgtgattttttcaaattatta 14465126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 444
Target Start/End: Original strand, 19230327 - 19230368
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtc 444  Q
    |||||||||||||||| ||||| ||||||||||||| |||||    
T  19230327 ttacattgaattatgttattttctcaaattattatctatgtc 19230368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 21945544 - 21945511
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    ||||| ||||||||||||||||||||||||||||    
T  21945544 ttacactgaattatgtcattttttcaaattatta 21945511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 2234308 - 2234260
Alignment:
Q  386 acgacacaaacacatagttacattgaattatgtcattttttcaaattat 434  Q
    |||||||  ||||||| |||||||||||||||| ||||| |||||||||    
T  2234308 acgacactgacacataattacattgaattatgtgattttctcaaattat 2234260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 5177025 - 5176985
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgt 443  Q
    |||||||||||||||| ||||| ||||| ||||||||||||    
T  5177025 ttacattgaattatgttattttctcaaaatattatcaatgt 5176985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 10635029 - 10634985
Alignment:
Q  405 acattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||||||||||||||||||||| | |||||| | |||||||    
T  10635029 acattgaattatgtcattttttcaaaattttatcagtatcgacgt 10634985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 31552475 - 31552519
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgac 447  Q
    |||||||| ||||||||||||||| ||||||||||  ||||||||    
T  31552475 ttacattggattatgtcattttttgaaattattattgatgtcgac 31552519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 32910597 - 32910557
Alignment:
Q  398 catagttacattgaattatgtcattttttcaaattattatc 438  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  32910597 cataattacactgaattatgtcattttctcaaattattatc 32910557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 12704675 - 12704710
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    ||||||||||||||||||||||||||||||||||||    
T  12704675 ttacattgaattatgtcattttttcaaattattatc 12704710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 437
Target Start/End: Original strand, 41319328 - 41319362
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattat 437  Q
    |||||||||||||||||||||||||||||||||||    
T  41319328 ttacattgaattatgtcattttttcaaattattat 41319362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 11093611 - 11093575
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatca 439  Q
    |||| ||||||||||||||||||||||||||||||||    
T  11093611 ttactttgaattatgtcattttttcaaattattatca 11093575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 2408657 - 2408714
Alignment:
Q  387 cgacacaaacacatagttacattgaattatgtcattttttcaaattattatcaatgtcg 445  Q
    ||||||||| ||||| ||||||||||||||||  |||||||||||| ||||| ||||||    
T  2408657 cgacacaaa-acataattacattgaattatgtggttttttcaaatttttatcgatgtcg 2408714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 52369816 - 52369774
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcg 445  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||    
T  52369816 ttacattgaattatgtaattttctcaaattattatccatgtcg 52369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 11252027 - 11251978
Alignment:
Q  395 acacatagttacattgaattatgtcattttttcaaattattatcaatgtc 444  Q
    ||||||| ||||| |||||||||| ||||| ||||||||||| |||||||    
T  11252027 acacataattacactgaattatgtgattttctcaaattattagcaatgtc 11251978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 9210846 - 9210878
Alignment:
Q  406 cattgaattatgtcattttttcaaattattatc 438  Q
    ||||||||||||||||||| |||||||||||||    
T  9210846 cattgaattatgtcattttctcaaattattatc 9210878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 20503506 - 20503474
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatt 435  Q
    ||||| |||||||||||||||||||||||||||    
T  20503506 ttacactgaattatgtcattttttcaaattatt 20503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 20691360 - 20691324
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatca 439  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  20691360 ttacactgaattatgtcattttctcaaattattatca 20691324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 25908861 - 25908893
Alignment:
Q  407 attgaattatgtcattttttcaaattattatca 439  Q
    ||||||||||||||||||||||||||| |||||    
T  25908861 attgaattatgtcattttttcaaattactatca 25908893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 438
Target Start/End: Complemental strand, 30563454 - 30563415
Alignment:
Q  399 atagttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  30563454 atagttacattgaattatgtcattttctcaaattattatc 30563415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 18571013 - 18570978
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||||||| |||||||||||||    
T  18571013 ttacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 25317173 - 25317134
Alignment:
Q  408 ttgaattatgtcattttttcaaattattatcaatgtcgac 447  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  25317173 ttgaattatgtcattttttcaaattattatcggtgtcgac 25317134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 40682023 - 40681988
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||||||| |||||||||||||    
T  40682023 ttacattgaattatgtcattttctcaaattattatc 40681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 445
Target Start/End: Complemental strand, 4332975 - 4332925
Alignment:
Q  395 acacatagttacattgaattatgtcattttttcaaattattatcaatgtcg 445  Q
    ||||||| |||||||||||||||| |||||  ||||||||||||| |||||    
T  4332975 acacataattacattgaattatgtgattttcccaaattattatcagtgtcg 4332925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 19613631 - 19613677
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||||||||||| ||||| |||||||||||| | |||||||||    
T  19613631 ttacattgaattatgttattttctcaaattattatgagtgtcgacgt 19613677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 24011069 - 24011035
Alignment:
Q  411 aattatgtcattttttcaaattattatcaatgtcg 445  Q
    |||||||||||||| ||||||||||||||||||||    
T  24011069 aattatgtcattttctcaaattattatcaatgtcg 24011035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 449
Target Start/End: Complemental strand, 9626981 - 9626937
Alignment:
Q  404 tacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||| ||||||||||||||| ||||||||||||| |||||||||    
T  9626981 tacattcaattatgtcattttt-caaattattatcagtgtcgacgt 9626937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 10250767 - 10250726
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtc 444  Q
    |||||||||||| ||| ||||| |||||||||||||||||||    
T  10250767 ttacattgaattgtgttattttctcaaattattatcaatgtc 10250726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 12668441 - 12668474
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    ||||| ||||||||||||||||||||||||||||    
T  12668441 ttacactgaattatgtcattttttcaaattatta 12668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 437
Target Start/End: Complemental strand, 24894521 - 24894492
Alignment:
Q  408 ttgaattatgtcattttttcaaattattat 437  Q
    ||||||||||||||||||||||||||||||    
T  24894521 ttgaattatgtcattttttcaaattattat 24894492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 28943432 - 28943474
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcg 445  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  28943432 ttacattgagttatgtcattttatcaaattattatcaatgtcg 28943474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 30606081 - 30606119
Alignment:
Q  402 gttacattgaattatgtcattttttcaaattattatcaa 440  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  30606081 gttacattgaattatgtcattttttgaaattattatcaa 30606119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 44172880 - 44172945
Alignment:
Q  377 gacaccaatacgacacaaacacatag--ttacattgaattatgtcattttttcaaattattatcaa 440  Q
    |||||||| || ||||||||||||    |||||||||||||||||||||| |||||||||||||||    
T  44172880 gacaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatcaa 44172945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 44021017 - 44020981
Alignment:
Q  402 gttacattgaattatgtcattttttcaaattattatc 438  Q
    ||||||||||||||||| |||||||||||||||||||    
T  44021017 gttacattgaattatgtaattttttcaaattattatc 44020981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 11700858 - 11700811
Alignment:
Q  389 acacaaacacatagttacattgaattatgtcattttttcaaattatta 436  Q
    ||||| ||||||| |||||||||||||||| ||||| |||||||||||    
T  11700858 acacagacacataattacattgaattatgtgattttgtcaaattatta 11700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 38134424 - 38134459
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||||||| |||||||||||||    
T  38134424 ttacattgaattatgtcattttctcaaattattatc 38134459  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 444
Target Start/End: Original strand, 36013816 - 36013858
Alignment:
Q  403 ttacattgaattatgtcattttt-tcaaattattatcaatgtc 444  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  36013816 ttacattgaattatgtcatttttctcaaattattatcattgtc 36013858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 7438747 - 7438714
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    |||||||||||||||| |||||||||||||||||    
T  7438747 ttacattgaattatgtgattttttcaaattatta 7438714  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 35862005 - 35861972
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    |||||||||||||||| |||||||||||||||||    
T  35862005 ttacattgaattatgtgattttttcaaattatta 35861972  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 431
Target Start/End: Original strand, 7241012 - 7241040
Alignment:
Q  403 ttacattgaattatgtcattttttcaaat 431  Q
    |||||||||||||||||||||||||||||    
T  7241012 ttacattgaattatgtcattttttcaaat 7241040  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 438
Target Start/End: Complemental strand, 9783429 - 9783397
Alignment:
Q  406 cattgaattatgtcattttttcaaattattatc 438  Q
    ||||||| |||||||||||||||||||||||||    
T  9783429 cattgaactatgtcattttttcaaattattatc 9783397  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 19930959 - 19930991
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatt 435  Q
    |||||||||||||||||||||| ||||||||||    
T  19930959 ttacattgaattatgtcattttatcaaattatt 19930991  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 21247754 - 21247790
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatca 439  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  21247754 ttacattgaattacgtcattttctcaaattattatca 21247790  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 27980837 - 27980805
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatt 435  Q
    |||||||||||||||||||||||| ||||||||    
T  27980837 ttacattgaattatgtcattttttaaaattatt 27980805  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 38134350 - 38134390
Alignment:
Q  325 actcctcggattaggtgtgtcctggtgtcgaatacttatcg 365  Q
    ||||||||||||||| |||||| | ||||||||||||||||    
T  38134350 actcctcggattaggcgtgtcccgatgtcgaatacttatcg 38134390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 6211442 - 6211488
Alignment:
Q  388 gacacaaacacatagttacattgaattatgtcattttttcaaattatta 436  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  6211442 gacaccaacacata--tacattgaattatgtcattttttcaaattatta 6211488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 5307098 - 5307056
Alignment:
Q  406 cattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  5307098 cattgaattatgtcattttt-caaattattatcagtgtcgacgt 5307056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 9383039 - 9382981
Alignment:
Q  377 gacaccaatacgacacaaacacatagttacattgaattatgtcattttttcaaattatt 435  Q
    |||||| | |||||||| ||||||| ||||||||||||||||  |||| ||||||||||    
T  9383039 gacaccgacacgacacagacacataattacattgaattatgtagttttctcaaattatt 9382981  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 28745542 - 28745496
Alignment:
Q  400 tagttacattgaattatgtcattttttcaaattattatcaatgtcga 446  Q
    ||||||||||||||||||| | ||||||||||||||| || ||||||    
T  28745542 tagttacattgaattatgtgaatttttcaaattattagcagtgtcga 28745496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 437
Target Start/End: Original strand, 34201064 - 34201098
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattat 437  Q
    |||||||||||||||||||||| ||||||||||||    
T  34201064 ttacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 29198497 - 29198530
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    |||||||||||||||||||||| |||||||||||    
T  29198497 ttacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 34739080 - 34739125
Alignment:
Q  404 tacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    ||||||||||||||||||||| ||| ||||||||| ||||| ||||    
T  34739080 tacattgaattatgtcattttctcatattattatcgatgtcaacgt 34739125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 448
Target Start/End: Original strand, 2925116 - 2925160
Alignment:
Q  405 acattgaattatgtcatttt-ttcaaattattatcaatgtcgacg 448  Q
    ||||| |||||||||||||| |||||||||||||||| |||||||    
T  2925116 acattaaattatgtcatttttttcaaattattatcaacgtcgacg 2925160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 3508093 - 3508057
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatca 439  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  3508093 ttacattgaattatgttattttctcaaattattatca 3508057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 29447125 - 29447161
Alignment:
Q  400 tagttacattgaattatgtcattttttcaaattatta 436  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  29447125 tagttacattgaattatgtgattttctcaaattatta 29447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 41831955 - 41831991
Alignment:
Q  400 tagttacattgaattatgtcattttttcaaattatta 436  Q
    |||||||| |||||||||| |||||||||||||||||    
T  41831955 tagttacactgaattatgtgattttttcaaattatta 41831991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 30847738 - 30847771
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattatta 436  Q
    ||||||||||||||||||||||||||||||||||    
T  30847738 ttacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 11571626 - 11571591
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||||||| |||||||||||||    
T  11571626 ttacattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 40747791 - 40747826
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||||||||||||||||||| |||||||||||||    
T  40747791 ttacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 3921708 - 3921674
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattat 437  Q
    |||||||||||||||||||||| ||||||||||||    
T  3921708 ttacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 7988469 - 7988515
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||||||||||||| ||| | |||||||||||| |||||||||    
T  7988469 ttacattgaattatgtcactttcttaaattattatcagtgtcgacgt 7988515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 24462288 - 24462334
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||||||||||||||||||||||| | | |||| |||||||||    
T  24462288 ttacattgaattatgtcattttttcaaaatttgatcagtgtcgacgt 24462334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 38078679 - 38078725
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgtcgacgt 449  Q
    |||||||||||||||| ||||||||||||||||| |  |||||||||    
T  38078679 ttacattgaattatgtgattttttcaaattattagctgtgtcgacgt 38078725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 17754356 - 17754319
Alignment:
Q  399 atagttacattgaattatgtcattttttcaaattatta 436  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  17754356 atagttacactgaattatgtaattttttcaaattatta 17754319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 498415 - 498450
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatca 439  Q
    |||||||||||||||||| ||||||||||||||||||    
T  498415 ttacattgaattatgtca-tttttcaaattattatca 498450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 7918169 - 7918197
Alignment:
Q  325 actcctcggattaggtgtgtcctggtgtc 353  Q
    |||||||||||||||||||||||||||||    
T  7918169 actcctcggattaggtgtgtcctggtgtc 7918197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 42325602 - 42325566
Alignment:
Q  402 gttacattgaattatgtcattttttcaaattattatc 438  Q
    |||||| |||||||||||||||| |||||||||||||    
T  42325602 gttacactgaattatgtcattttctcaaattattatc 42325566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 42386415 - 42386454
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgt 443  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  42386415 ttacattgaattatg-cattttttcaaattattatcgatgt 42386454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 1080 - 1043
Alignment:
Q  399 atagttacattgaattatgtcattttttcaaattatta 436  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  1080 atagttacactgaattatgtaattttttcaaattatta 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 439
Target Start/End: Complemental strand, 7728 - 7695
Alignment:
Q  406 cattgaattatgtcattttttcaaattattatca 439  Q
    ||||||||||||||||||| ||||||||||||||    
T  7728 cattgaattatgtcattttctcaaattattatca 7695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 102946 - 102906
Alignment:
Q  403 ttacattgaattatgtcattttttcaaattattatcaatgt 443  Q
    |||||||||||||| ||||||| ||||||||||||| ||||    
T  102946 ttacattgaattatatcattttctcaaattattatcgatgt 102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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