View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_11 (Length: 374)
Name: NF8324_low_11
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 184 - 359
Target Start/End: Original strand, 16201422 - 16201597
Alignment:
| Q |
184 |
atgaatcataaataaagaaatgaagtcacaaagtactaaccttgagttgattcattttcccctggtttcccaaaccaagatccaacagtttctttaacca |
283 |
Q |
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| T |
16201422 |
atgaatcataaataaagaaatgaagtcacaaagtactaaccttgagttgattcattttcccctggtttcccaaaccaagatccaacagtttccttaacca |
16201521 |
T |
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| Q |
284 |
tatcaaccatacctttaccaaactccccatctttaatctcatcatcccaacctcctaacctcctcttcacttcttc |
359 |
Q |
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| T |
16201522 |
tatcaaccatacctttaccaaactccccatctttaatctcatcatcccaacctcctaacctcctcttcacttcttc |
16201597 |
T |
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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 16201168 - 16201310
Alignment:
| Q |
18 |
ccaacttcagcaccagtattcctaggcattccttcacttcctacaa----acaaattaaaaatcaaaggtcacactttttaccagattgtgtaaactgta |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16201168 |
ccaacctcagcaccagtattcctaggcattccttcacttcctacaataacacaaattaaaaatcaaaggtcacactttttac------------------ |
16201249 |
T |
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| Q |
114 |
atctatgaatgtctcaaaatcacagcaaaacacttgtacaaactcttcctagtctattagtttta |
178 |
Q |
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| T |
16201250 |
----atgaatgtatcaaaattacagcaaaacacttgtacaaactcttcttagtctattagtttta |
16201310 |
T |
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