View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_13 (Length: 345)
Name: NF8324_low_13
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 9302329 - 9302015
Alignment:
| Q |
4 |
gattattcttagcgtgatggtgaagttacatttgattattagggacaacaaacataaatatcacaaatggatttccatctgatagaaagattgaattctc |
103 |
Q |
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| T |
9302329 |
gattattcttagcgtgatggtgaagttacatttgattattagggacaacaaacataaatatcacaaatggatttccatctgatagaaagattgaattctc |
9302230 |
T |
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| Q |
104 |
tatattcatggttcctaacact--gcacacattcatacctccataagagttttattcaccgaaaatatagaacccaagtattgtgtggttagaagaaagg |
201 |
Q |
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| T |
9302229 |
tatattcatggttcctaacactcagcccacattcatacctccataagagttttattcaccgaaaatatagaacccaagtattgtgtggttagaagaaagg |
9302130 |
T |
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| Q |
202 |
tgaattgatgtgattatgtgttgtttacggacaaataaataaggtggtagtaaagtgtaaacatcgccacctcttcattgccaagttgtttgatcaactt |
301 |
Q |
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| T |
9302129 |
tgaattgatgtgattatgtgttgtttacggacaaataaataaggtggtagtaaagtgtaaacatcgtcacctcttcattgccaagttgtttgatcaactt |
9302030 |
T |
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| Q |
302 |
caaggagcctagtgt |
316 |
Q |
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| T |
9302029 |
caaggagcttagtgt |
9302015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 16102571 - 16102637
Alignment:
| Q |
4 |
gattattcttagcgtgatggtgaagttacatttgattattagggacaacaaacataaatatcacaaa |
70 |
Q |
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| T |
16102571 |
gattattcttagcatgatggtgaagttatatttggtcatttgggacactaaagatcaatatcacaaa |
16102637 |
T |
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