View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_15 (Length: 303)
Name: NF8324_low_15
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 8164237 - 8164013
Alignment:
| Q |
20 |
acaagttaatgtgggaaacaattgaaaaagcaaatgcttgaaaagcttgtatctgatagtaatgatccttcaattaacttatagtaacatatagaagcta |
119 |
Q |
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| T |
8164237 |
acaagttaatgtgggaaacaattgaaaaagcaaatgcttgaaaagcttgtatctgatagtaatgatccttcaattaacttatagtaacatatagaagcta |
8164138 |
T |
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| Q |
120 |
attcaacaacttatgttatatgcaaatgcatataagt--atgtaacgaatcgtgtaagcggagaaatagtggaataattgaataatatctgcagctactt |
217 |
Q |
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| T |
8164137 |
attcaacaacttatgttatatgcaaatgcatataagtaaaagtaacgaatcgtgtaagcggagaaatagtggaataattgaataatatctgcagctactt |
8164038 |
T |
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| Q |
218 |
ataagtaaatgtaaagaatcatctt |
242 |
Q |
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| T |
8164037 |
ataagtaaatgtaaagaatcatctt |
8164013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 7315985 - 7316261
Alignment:
| Q |
19 |
aacaagttaatgtgggaaacaattgaaaaagcaaatgcttgaaaagcttgtatctgatagtaatgatccttcaattaact---tatagtaacatatagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| | | | ||||||||||||||| |
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| T |
7315985 |
aacaagttaatgtgggaaacaattgaaaaagcaaatgcttgaaaagttagtaattgatagtaatgatccttcaatcagcaagatttagtaacatatagaa |
7316084 |
T |
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| Q |
116 |
gctaattcaacaacttatgttatatgcaaatgcatataagta--tgtaacgaatcgtgtaagcggagaaatagtggaataattgaataatatctgcagct |
213 |
Q |
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| T |
7316085 |
gctgatcaaacaactcatgttttatgaagttacatataagtaaatgtaaggaatcatgtaaccagagcaatagtggaataattgaataatagctgcaact |
7316184 |
T |
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| Q |
214 |
acttataagtaaatgtaaagaatcatcttgggagtcttgatgaccttctctgccttcatcatcttcttccagcagaa |
290 |
Q |
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| T |
7316185 |
acttataagtaaatgtaaagaatcatcttgggagtcttgatgatcttctctgccttcatcatcttcttccagcagaa |
7316261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 181 - 290
Target Start/End: Complemental strand, 7219895 - 7219786
Alignment:
| Q |
181 |
aaatagtggaataattgaataatatctgcagctacttataagtaaatgtaaagaatcatcttgggagtcttgatgaccttctctgccttcatcatcttct |
280 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7219895 |
aaatagtggaataattgaataatagctgcaactacttataagtaaatgtaaagaatcatcttgggagtcttgatgatcttctctgccttcatcatcttct |
7219796 |
T |
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| Q |
281 |
tccagcagaa |
290 |
Q |
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| T |
7219795 |
tccagcagaa |
7219786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 7219980 - 7219911
Alignment:
| Q |
24 |
gttaatgtgggaaacaattgaaaaagcaaatgcttgaaaagcttgtatctgatagtaatgatccttcaat |
93 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7219980 |
gttaatgtgggaaacaactgaaaaagcaaatgcttgaaaagctagtatctgatagtaatgatccttcaat |
7219911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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