View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_16 (Length: 302)
Name: NF8324_low_16
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 8345859 - 8346141
Alignment:
| Q |
1 |
aataaaagcagcttatatagccaatgcaaatcatcactaatgcaaatccttttgtacgtttgtctatcttatattatcaaaaatttagaacacatcgcga |
100 |
Q |
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| T |
8345859 |
aataaaagcagcttatatagccaatgcaaatcatcactaatgcaaatccttttgtatgtttgtctagcttatattatcaaaaatttagaacacattgcga |
8345958 |
T |
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| Q |
101 |
cttctcagttatcactattctaccattttcgtacatgtttcatcaatagaaaatcatacattaaactgatatggctactaggcaagaatgaataaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8345959 |
cttctcagttatcactattctaccattttcgttcatgtttcatcaatagaaaatcatacattaaactgatatggctactaggcaagaatgaataaa--aa |
8346056 |
T |
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| Q |
201 |
cttaggaagttaatggattagcacagttttcgtattaaaaccttggtatctatatcccttaataccactgttgacttagtgtataa |
286 |
Q |
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| T |
8346057 |
cttaggaagttgatggtttagcacagttttcgtattaaaacattggtatctatatcccttaataccact-ttgatttagtgtataa |
8346141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 73 - 286
Target Start/End: Original strand, 8329460 - 8329673
Alignment:
| Q |
73 |
attatcaaaaatttagaacacatcgcgacttctcagttatcactattctaccattttcgtacatgtttcatcaatagaaaatcatacattaaactgatat |
172 |
Q |
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| T |
8329460 |
attatcaaaaatttagaacacatcgcgacttctcagttatcactattctaccattttcatacatgtttcatcaatagaaaatcatacattaaactaatat |
8329559 |
T |
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| Q |
173 |
ggctactaggcaagaatgaataaaataacttaggaagttaatggattagcacagttttcgtattaaaaccttggtatctatatcccttaataccactgtt |
272 |
Q |
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| T |
8329560 |
ggctactaggcaagaatgaataaaataacttaggaagttaatggtttagcacaattttcgtattaaaacattggtatctatatcccttaataccactgtt |
8329659 |
T |
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| Q |
273 |
gacttagtgtataa |
286 |
Q |
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| T |
8329660 |
gacttagtgtataa |
8329673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 71 - 286
Target Start/End: Original strand, 8343251 - 8343477
Alignment:
| Q |
71 |
atattatcaaaaatttagaacacatcgcgacttctcagttatcact-----------attctaccattttcgtacatgtttcatcaatagaaaatcatac |
159 |
Q |
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| T |
8343251 |
atattatcaaaaatttagaacacatcgcgacttctcagctatcactctctgtggagtattctaccattttcatacatgtttcataaatcgaaaatcatac |
8343350 |
T |
|
| Q |
160 |
attaaactgatatggctactaggcaagaatgaataaaataacttaggaagttaatggattagcacagttttcgtattaaaaccttggtatctatatccct |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8343351 |
attaaactgatatggctactaggcaagaatgaataaaataacttaggaagttaatggtttagcacagttttcgtattaaaacattggtatctatatccct |
8343450 |
T |
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| Q |
260 |
taataccactgttgacttagtgtataa |
286 |
Q |
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| T |
8343451 |
taataccactgttgacttagtgtataa |
8343477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8339151 - 8339210
Alignment:
| Q |
1 |
aataaaagcagcttatatagccaatgcaaatcatcactaatgcaaatccttttgtacgtt |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8339151 |
aataaaagcagcttatatagccaatgcaaatcatcactaatgcaaatccttttgtacgtt |
8339210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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