View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_18 (Length: 282)
Name: NF8324_low_18
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 45011530 - 45011671
Alignment:
| Q |
70 |
accttattgatacaataattcaaaggcttcatgtaatgttggtctaaacctatagacatcaagctttacattttgtttgtccaaataaaccgacttaaag |
169 |
Q |
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| T |
45011530 |
accttattgatgcaataactcaagggctttctgtaatgttggtctaaacctattaacatcaagccttacattttgtttgtcaaaatacactgacctaaag |
45011629 |
T |
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| Q |
170 |
gcatgccatccctgtttctcaattgatgagggatcctttata |
211 |
Q |
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| T |
45011630 |
gcttcccatccttgtttttcaattgatgagggatcctttata |
45011671 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 45011696 - 45011751
Alignment:
| Q |
212 |
tgtataagagtgctttcttcaaaccttattttatattccaagtactttatgttcat |
267 |
Q |
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| T |
45011696 |
tgtataagagtgctttcatccaaccttattttatattccaagtattttatgttcat |
45011751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 3172310 - 3172365
Alignment:
| Q |
212 |
tgtataagagtgctttcttcaaaccttattttatattccaagtactttatgttcat |
267 |
Q |
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| T |
3172310 |
tgtataagagtgctttcttccaaccttattttatattccaagtactttatgttcat |
3172365 |
T |
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