View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_2 (Length: 611)
Name: NF8324_low_2
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 37987481 - 37987738
Alignment:
| Q |
18 |
atatgtagtagctgaatgttcataaattagctttgtaaatatcaagtaaatgttcctattatgtgagtgttagagtgtttatatttatgcttatattatt |
117 |
Q |
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| T |
37987481 |
atatgtagtagctgaatgttcataaattagctttgtaaatatcaagtaaatgttcctattatgtgagtgttagagtgtttatatttatgcttatattatt |
37987580 |
T |
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| Q |
118 |
tgatagttgtttatgaaaatttacagactgagattgaattaagttatgcctgaattggatttatcatgatgatttgtgacatggggaatacgtagttgtg |
217 |
Q |
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| T |
37987581 |
tgatagttgtttatgaaaatttacagactgggattgaattaagttatgcctgaattggatttatcatgatgatttgtgacatggggaatatgtagttgtc |
37987680 |
T |
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| Q |
218 |
tattgtaaagtaaaagagatagtgagattgaggtgcgtagactagttgcttgatattta |
276 |
Q |
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| T |
37987681 |
tattgtaaagtaaaagagatagtgaga-tcaggtgcgtagactagttgcttgatattta |
37987738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 275 - 456
Target Start/End: Original strand, 37988002 - 37988186
Alignment:
| Q |
275 |
taatatttatgttgagaatttcaaacacatctttatccaaaatagcacttaatga---ttcatgaggtgatttgaaagtaatgtcgacagacaataattg |
371 |
Q |
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| T |
37988002 |
taatatttatgttgagaatttcaaacacatctttatccaaaatagcaattaatgatgattcatgaggtgatttgaaagtaatgtcgacagacaataattg |
37988101 |
T |
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| Q |
372 |
gaaaacactcaaaccagtacagtactagcggtaatactatataataattgttgtcatttgataaagagttgattcatatttaata |
456 |
Q |
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| T |
37988102 |
gaaaacactcaaaccagtacagtactagcggtaatagtatataataattgttgtcatttgataaagagttcgttcatatttaata |
37988186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 455 - 606
Target Start/End: Original strand, 37988586 - 37988738
Alignment:
| Q |
455 |
taataacacgagttcaactttaagttgttctatttgtttctgcggtgcattaaacatagacgcacgttttggccaaaactacta-tcttgagcttcacca |
553 |
Q |
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| T |
37988586 |
taataacacgagttcaactttaagttgttctatttgtttatgcggtgcattaaacgtagacgcatgttttgaccaaagctactaatcttgagcttcacca |
37988685 |
T |
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| Q |
554 |
aaatcacggtagttgaacattgaaaagtgatatttgtgcttccaccaccaaac |
606 |
Q |
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| T |
37988686 |
aaatcacggtagttgaacattgaaaagtgatatttgtgcttccaccaccaaac |
37988738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 495 - 599
Target Start/End: Original strand, 48949150 - 48949254
Alignment:
| Q |
495 |
tgcggtgcattaaacatagacgcacgttttggccaaaactactatcttgagcttcaccaaaatcacggtagttgaacattgaaaagtgatatttgtgctt |
594 |
Q |
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||||||||| ||| |||||||||||||| || ||||| | ||||| ||||||||| ||||||||||||||||| ||||| | ||||||||| ||||| |
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| T |
48949150 |
tgcggtgcactaagcatagacgcacgttctgcccaaagccactattttgagcttcttaaaaatcacggtagttgagcattgggatgtgatatttatgctt |
48949249 |
T |
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| Q |
595 |
ccacc |
599 |
Q |
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| T |
48949250 |
ccacc |
48949254 |
T |
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