View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_21 (Length: 274)
Name: NF8324_low_21
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 11664241 - 11663983
Alignment:
| Q |
1 |
atcatctttggtgataccataattgtgaatcctcgagtcttcttcggttatagggacaaccttagcagttatcctaaaatttccttcaacttcaacaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664241 |
atcatctttggtgataccataattgtgaatcctcgagtcttcttcggttatagggacaaccttagcagttatcctaaaatttccttcaacttcaacaata |
11664142 |
T |
|
| Q |
101 |
atgttgtttgtagaagtttccctaacaaaggatacgccagatgattcccatttcgcaccttctgattcgttgagagtgatgggttcgccgtcaaaggaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
11664141 |
atgttgtttgtagaagtttccctaacaaaggataccccagatgattcccatttcgcaccttctgattcgttgagagtgatgggctcaccgtcaaaggaga |
11664042 |
T |
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| Q |
201 |
gggcaagacggtctacagaatcatcccatgttgatgttttttgggcaccaaggaaaagt |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664041 |
gggcaagacggtctacagaatcatcccatgttgatgttttttgggcaccaaggaaaagt |
11663983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 7344255 - 7344513
Alignment:
| Q |
1 |
atcatctttggtgataccataattgtgaatcctcgagtcttcttcggttatagggacaaccttagcagttatcctaaaatttccttcaacttcaacaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
7344255 |
atcatctttggtgataccataattgtgaatcctcgagtcttcttcggttataggaacaaccttggcagttattctaaaatttccttcaacttcaacaatg |
7344354 |
T |
|
| Q |
101 |
atgttgtttgtagaagtttccctaacaaaggatacgccagatgattcccatttcgcaccttctgattcgttgagagtgatgggttcgccgtcaaaggaga |
200 |
Q |
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| T |
7344355 |
atgttgtttgtagaagtttccctaacaatggacacactagacgattcccatttcgttccttctgattcgtggagggtgatgggttcaccgtcaaaagaga |
7344454 |
T |
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| Q |
201 |
gggcaagacggtctacagaatcatcccatgttgatgttttttgggcaccaaggaaaagt |
259 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7344455 |
gggcaaggcggtctacagaatcatcccatgttgatgtttttttggcaccaaggaaaagt |
7344513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 11669552 - 11669298
Alignment:
| Q |
1 |
atcatctttggtgataccataattgtgaatcctcgagtcttcttcggttatagggacaaccttagcagttatcctaaaatttccttcaacttcaacaata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11669552 |
atcatctttggtgataccataattatgaaccctcgagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaata |
11669453 |
T |
|
| Q |
101 |
atgttgtttgtagaagtttccctaacaaaggatacgccagatgattcccatttcgcaccttctgattcgttgagagtgatgggttcgccgtcaaaggaga |
200 |
Q |
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||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| |
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| T |
11669452 |
atgttgtttgttgaagtttccctaacaaaggacacgccggatgattcccatttcgcaccttcagattcgtggagggtgatgggttctccgtcaaaggaga |
11669353 |
T |
|
| Q |
201 |
gggcaagacggtctacagaatcatcccatgttgatgttttttgggcaccaaggaa |
255 |
Q |
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|||||| || || ||||| ||||||||||| | |||||| |||||||||||||| |
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| T |
11669352 |
tggcaaggcgatccacagagtcatcccatgtggctgttttctgggcaccaaggaa |
11669298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 11655784 - 11655530
Alignment:
| Q |
1 |
atcatctttggtgataccataattgtgaatcctcgagtcttcttcggttatagggacaaccttagcagttatcctaaaatttccttcaacttcaacaata |
100 |
Q |
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|
|||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11655784 |
atcatctttggtgataccataattatgaaccctcgagtcttcttcggttattgggacaaccttagcagttatcctaaaatttccttcaacttcaacaata |
11655685 |
T |
|
| Q |
101 |
atgttgtttgtagaagtttccctaacaaaggatacgccagatgattcccatttcgcaccttctgattcgttgagagtgatgggttcgccgtcaaaggaga |
200 |
Q |
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||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||| |||| |
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| T |
11655684 |
atgttgtttgttgaagtttccctaacaaaggacacgccggatgattcccatttcgcaccttcagattcgtggagggtgatgggttctccgtcaaatgaga |
11655585 |
T |
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| Q |
201 |
gggcaagacggtctacagaatcatcccatgttgatgttttttgggcaccaaggaa |
255 |
Q |
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|||||| || || ||||| ||||||||||| | |||||| |||||||||||||| |
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| T |
11655584 |
tggcaaggcgatccacagagtcatcccatgtggctgttttctgggcaccaaggaa |
11655530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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