View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_22 (Length: 271)
Name: NF8324_low_22
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_22 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 26619686 - 26619472
Alignment:
| Q |
49 |
ctttatcttctcatagaccttgacattgcttgcatcaaaatgcatgtgttaataatcaaagttccctacatgttgcagccaaccttgtgttccatgaacg |
148 |
Q |
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| T |
26619686 |
ctttatcttctcatagaccttgacactgcttgcaacaaaatgcatgtgttaataatcaaagttccctacatgttgcagccaaccttgtgttccatgaacg |
26619587 |
T |
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| Q |
149 |
tactaagcattttgatatagattgccacattgtcagagagaaatggttaagtcatgaaacttcttccagtttcttccaaagaccaaattgttgatttctt |
248 |
Q |
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| T |
26619586 |
tactaagcatttggatatagattgccacattgacagagagaaatggttaagtcatgaaacttcttccagtttcttccaaagaccaaattgttgatttctt |
26619487 |
T |
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| Q |
249 |
cactaagtctctgct |
263 |
Q |
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| T |
26619486 |
cactaagtctctgct |
26619472 |
T |
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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 90400 - 90458
Alignment:
| Q |
132 |
cttgtgttccatgaacgtactaagcattttgatatagattgccacattgtcagagagaa |
190 |
Q |
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| T |
90400 |
cttgtgttccatgaacgtaccaagcacttagaaatagattgtcatattgtaagagagaa |
90458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 22645746 - 22645794
Alignment:
| Q |
203 |
tgaaacttcttccagtttcttccaaagaccaaattgttgatttcttcac |
251 |
Q |
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| T |
22645746 |
tgaaacttctcccagtttcttctcaagatcaaattgctgatttcttcac |
22645794 |
T |
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