View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_23 (Length: 260)
Name: NF8324_low_23
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 60 - 251
Target Start/End: Original strand, 8414882 - 8415063
Alignment:
| Q |
60 |
aaatcgaaaacaaagagcagataaagataatattgtaggaatttttcttcgttaactaatcatctaatgcccttcctagatcgtcgattatatatttcta |
159 |
Q |
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| T |
8414882 |
aaatcgaaaacaaagagcaga--aagataatattgtaggaatttttcttcgtta--------tctaatgcccttcctagatcgtcgattatatatttcta |
8414971 |
T |
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| Q |
160 |
aagttcaattatgcttacacatgtccctcatcatttgtttccatgccttgcaaccaacgcaagatctgttatacatattaacttatgatgtc |
251 |
Q |
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| T |
8414972 |
aagttcaattatgcttacacatgtccctcatcatttgtttccatgccttgcaaacaacgcaagatctgttatacatattaacttatgatgtc |
8415063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 8437255 - 8437375
Alignment:
| Q |
82 |
aaagataatattgtaggaatttttcttcgttaactaatcatctaatgcccttcctagatcgtcgattatata-tttctaaagttcaattatgcttacaca |
180 |
Q |
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||||||||||||| |||||| ||| || ||||||||||||||||||| ||||| | ||||||||||| ||||||| ||||||||||||| |||| |
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| T |
8437255 |
aaagataatattgcaggaatcgttcctccttaactaatcatctaatgcttttcct---ttatcgattatatactttctaattttcaattatgcttccaca |
8437351 |
T |
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| Q |
181 |
tgtccctcatcatttgtttccatg |
204 |
Q |
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| T |
8437352 |
tgtccatcatcattcgtttccatg |
8437375 |
T |
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