View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_25 (Length: 252)
Name: NF8324_low_25
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_25 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 11664712 - 11664471
Alignment:
| Q |
14 |
atgaatacataacaagnnnnnnntaaagagacatggtacacaattttttaaggttaaaccaaaatcattcaatttatttgatgatttgata---ctttat |
110 |
Q |
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| T |
11664712 |
atgaatacataacaagaaaaaaataaagagacatgatacacaattttttaaggttaaaccaaaatcattccatttatttgatgatttgatattactttat |
11664613 |
T |
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| Q |
111 |
tcttatcaataaaattataaatattttcatattgaagtatcatttgcgtgctctttaggacaataaaattatcttttgcagacaactccttctccatcaa |
210 |
Q |
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| T |
11664612 |
tcttatcaataaaattataaattttttcatattgaagtatcatttgcgtgctctttaggacaataaaattatcttttgcagacaactccttctccatcaa |
11664513 |
T |
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| Q |
211 |
ttccacttgtgcagctcaagctagggagggccaaattctcca |
252 |
Q |
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| T |
11664512 |
ttccacttgtgcagctcaagctagggagggccaaattctcca |
11664471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 38 - 252
Target Start/End: Original strand, 7343811 - 7344025
Alignment:
| Q |
38 |
aaagagacatgg-tacacaattttttaaggttaaaccaaaatcattcaatttatttgatgatttgatactttattcttatcaataaaattataaatattt |
136 |
Q |
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| T |
7343811 |
aaagagacatgaatacacatttttttaaggttaaaccaaaatcattcaagttatttgatgatttgatactttattcttattaataaaattataatt-ttt |
7343909 |
T |
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| Q |
137 |
tcatattg-aagtatcatttgcgtgctctttaggacaataaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagg |
235 |
Q |
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| T |
7343910 |
tc-tatgggaagtatcatcagcatcctcttttggacaatgaaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagg |
7344008 |
T |
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| Q |
236 |
gagggccaaattctcca |
252 |
Q |
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| T |
7344009 |
gagggccaaattctcca |
7344025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 11669858 - 11669796
Alignment:
| Q |
176 |
aaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggag |
238 |
Q |
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| T |
11669858 |
aaattatctcctgcaaacaactccttctccatcaacaccacttgtgcaactcatgctagggag |
11669796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 11656091 - 11656014
Alignment:
| Q |
175 |
aaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggagggccaaattctcca |
252 |
Q |
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| T |
11656091 |
aaaattatctcctgcatacaactccttgcccatcaattccacttgtacaactcatgctagggagactcaaattctcca |
11656014 |
T |
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