View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_low_27 (Length: 243)

Name: NF8324_low_27
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_low_27
NF8324_low_27
[»] chr1 (4 HSPs)
chr1 (22-230)||(18438591-18438796)
chr1 (22-230)||(18449449-18449654)
chr1 (22-230)||(18454542-18454747)
chr1 (31-82)||(42080703-42080754)
[»] chr5 (3 HSPs)
chr5 (19-226)||(31610030-31610249)
chr5 (28-83)||(11888191-11888246)
chr5 (31-82)||(33417438-33417489)
[»] chr2 (6 HSPs)
chr2 (21-226)||(9446963-9447180)
chr2 (19-196)||(31320242-31320430)
chr2 (24-82)||(21949909-21949967)
chr2 (140-185)||(38346612-38346657)
chr2 (34-82)||(14555896-14555944)
chr2 (22-82)||(13698129-13698189)
[»] chr7 (4 HSPs)
chr7 (34-82)||(8425057-8425105)
chr7 (22-176)||(30559269-30559434)
chr7 (31-82)||(49094557-49094608)
chr7 (31-82)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (31-83)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (31-82)||(2048991-2049042)
chr4 (31-82)||(39735820-39735871)
chr4 (33-82)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (34-82)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (36-81)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (22-82)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 18438591 - 18438796
Alignment:
Q  22 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttgttg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  18438591 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttg--- 18438687  T
Q  122 ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattctttttactactagatctgttgctggaatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438688 ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattctttttactactagatctgttgctggaatg 18438787  T
Q  222 gtttggtct 230  Q
    |||||||||    
T  18438788 gtttggtct 18438796  T

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Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 18449449 - 18449654
Alignment:
Q  22 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttgttg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  18449449 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttg--- 18449545  T
Q  122 ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattctttttactactagatctgttgctggaatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449546 ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattctttttactactagatctgttgctggaatg 18449645  T
Q  222 gtttggtct 230  Q
    |||||||||    
T  18449646 gtttggtct 18449654  T

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Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 18454542 - 18454747
Alignment:
Q  22 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttgttg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  18454542 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttg--- 18454638  T
Q  122 ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattctttttactactagatctgttgctggaatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454639 ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattctttttactactagatctgttgctggaatg 18454738  T
Q  222 gtttggtct 230  Q
    |||||||||    
T  18454739 gtttggtct 18454747  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 42080754 - 42080703
Alignment:
Q  31 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    |||||||||||||| ||||  ||||||||||||||||| |||||||||||||    
T  42080754 agtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatc 42080703  T

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Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 31610030 - 31610249
Alignment:
Q  19 aagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct-----------gactgtcttgttgaaagttccata 107  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  31610030 aagcaaaacactagtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgtcttgttgaaagttccata 31610129  T
Q  108 tcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattc-tttttactactaga 206  Q
    | ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||     
T  31610130 ttttgtagttgttgttcttatttgggttcaacttctgatattttagatggttgctgaatctatcttagtgtgatcgattgtattcttttttactactagt 31610229  T
Q  207 tctgttgctggaatggtttg 226  Q
    |||| ||||||| |||||||    
T  31610230 tctgctgctggattggtttg 31610249  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 11888246 - 11888191
Alignment:
Q  28 actagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct 83  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||    
T  11888246 actagtagtgagcatatacaaattcgttccaagaagggtgtgatcaaaagcaatct 11888191  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 33417438 - 33417489
Alignment:
Q  31 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    |||||||||||||||||||  ||||| ||||||||||| |||||||| ||||    
T  33417438 agtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatc 33417489  T

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Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 9446963 - 9447180
Alignment:
Q  21 gcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccatatc 109  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  9446963 gcaaaacactagtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgtcttgttgaaagttccatatc 9447062  T
Q  110 ttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatctta-gtgggatagattgtattctttttactactagatc 208  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||| | |||||| |||||| ||||||||||||||| ||    
T  9447063 ttgcagttgttgttcttatgtgggttcaacttctgttattttggatggtggctgaatctatcttaggggggatatattgtactctttttactactagttc 9447162  T
Q  209 tgttgctggaatggtttg 226  Q
    |  ||||||| |||||||    
T  9447163 tactgctggactggtttg 9447180  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 31320242 - 31320430
Alignment:
Q  19 aagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccata 107  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||           ||| |||||||||||||||||||||    
T  31320242 aagcaatacactagtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgattgtcttgttgaaagttccata 31320341  T
Q  108 tcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattctttt 196  Q
    |||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31320342 tcttgcagttgttgttcttatttgggttcatcttctgctattctagatggttgctgaatctatcttagtgggatagattgtattctttt 31320430  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 21949967 - 21949909
Alignment:
Q  24 aaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  21949967 aaacactagtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatc 21949909  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 38346657 - 38346612
Alignment:
Q  140 ttctgttattttagatggttgctgaatctatcttagtgggatagat 185  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||    
T  38346657 ttctgttattttggttggttgctgaatctatcttggtgggatagat 38346612  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14555896 - 14555944
Alignment:
Q  34 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    ||||| || |||||||  |||||||||||||||||||||||||||||||    
T  14555896 agtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatc 14555944  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 13698129 - 13698189
Alignment:
Q  22 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    |||| ||| |||||||||||||| ||||   ||||||  ||||||||||||||||||||||    
T  13698129 caaagcacaagtagtgagcacattcaaactggttccatgaagggtgtgatcaaaagcaatc 13698189  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 8425057 - 8425105
Alignment:
Q  34 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  8425057 agtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatc 8425105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 30559434 - 30559269
Alignment:
Q  22 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccatatct 110  Q
    |||| ||| ||| ||||||||||| |||   |||||||||||||||| |||||||||||||           |||| ||| |||||| |||||  |||      
T  30559434 caaagcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgacggtcatgttgacagttctgtattc 30559335  T
Q  111 tgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagt 176  Q
    |||||||| ||||| ||||||  |||  ||||||||||||| | ||||||||||||||||||||||    
T  30559334 tgcagttgctgttcatatttggtttcggcttctgttattttgggtggttgctgaatctatcttagt 30559269  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 49094608 - 49094557
Alignment:
Q  31 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    |||||||||||||||||||  ||||||||||| ||||| |||||||||||||    
T  49094608 agtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatc 49094557  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 38836146 - 38836197
Alignment:
Q  31 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    ||||||||||| |||||||  ||||||||||| ||||| |||||||||||||    
T  38836146 agtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatc 38836197  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 6982841 - 6982893
Alignment:
Q  31 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct 83  Q
    |||||||||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  6982841 agtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatct 6982893  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 2048991 - 2049042
Alignment:
Q  31 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    ||||||||||| |||||||  ||||||||||||||||| |||||||||||||    
T  2048991 agtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatc 2049042  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 39735820 - 39735871
Alignment:
Q  31 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    |||||||||||||||||||  |||||||| |||||||| |||||||||||||    
T  39735820 agtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatc 39735871  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 3959006 - 3958957
Alignment:
Q  33 tagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  3959006 tagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatc 3958957  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 16593 - 16545
Alignment:
Q  34 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    |||||||||||| |||  |||||||| ||||||||||||||||||||||    
T  16593 agtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatc 16545  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 19168189 - 19168234
Alignment:
Q  36 tgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaat 81  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  19168189 tgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaat 19168234  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 3830751 - 3830691
Alignment:
Q  22 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 82  Q
    |||| ||| |||||||||||||| ||||  |||||||  ||| ||||||||||||||||||    
T  3830751 caaagcacaagtagtgagcacattcaaactcgttccatgaagagtgtgatcaaaagcaatc 3830691  T

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