View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_28 (Length: 234)
Name: NF8324_low_28
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_28 |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 35678215 - 35678434
Alignment:
| Q |
4 |
aaatctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttggg |
103 |
Q |
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||||| |||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35678215 |
aaatcaatggaagatatcaaactaaatggctatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttggg |
35678314 |
T |
|
| Q |
104 |
aacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagagg |
203 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35678315 |
aagaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagagg |
35678414 |
T |
|
| Q |
204 |
ttgtcctggagtgttgtttg |
223 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35678415 |
ttgtcctggagtgttgtttg |
35678434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 35650135 - 35650354
Alignment:
| Q |
4 |
aaatctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttggg |
103 |
Q |
| |
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||||| |||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
35650135 |
aaatcaatggaagatatcaaactaaatggctatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagatccttcaagttggg |
35650234 |
T |
|
| Q |
104 |
aacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagagg |
203 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35650235 |
atcaacctctagagtttaaaccagaaaggtttatgaacagttcaatagattataaaggattggattttgaacttattccatttggagcaggaaggagagg |
35650334 |
T |
|
| Q |
204 |
ttgtcctggagtgttgtttg |
223 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35650335 |
ttgtcctggagtgttgtttg |
35650354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 35656815 - 35657034
Alignment:
| Q |
4 |
aaatctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttggg |
103 |
Q |
| |
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||||| |||||| |||||||| || | || ||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||| |||||| ||||| |
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| T |
35656815 |
aaatcaatggaagatatcaaaataaatggctatgacattgcagctggtacacaagtaatagtcaatgcttgggctatttctagagacccttcaagttggg |
35656914 |
T |
|
| Q |
104 |
aacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagagg |
203 |
Q |
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|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35656915 |
aagaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagggg |
35657014 |
T |
|
| Q |
204 |
ttgtcctggagtgttgtttg |
223 |
Q |
| |
|
||||||||| |||||||||| |
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| T |
35657015 |
ttgtcctggtgtgttgtttg |
35657034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 35642558 - 35642777
Alignment:
| Q |
4 |
aaatctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttggg |
103 |
Q |
| |
|
||||| |||||| ||||||||||| | || |||||||||| |||||| ||| |||| ||| ||||||||||||| |||||||||||| |||||| ||||| |
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| T |
35642558 |
aaatcaatggaagatatcaaactaaacggctatgacattgaagctggaacagaggttataatcaatgcttgggctattgcaagagacccttcaagttggg |
35642657 |
T |
|
| Q |
104 |
aacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagagg |
203 |
Q |
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|
|||| ||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35642658 |
aacatcctttagagtttaaaccagaaaggtttctgaacagttcaatagatttcaaaggatttgattttgaacttatcccatttggagcaggaaggagagg |
35642757 |
T |
|
| Q |
204 |
ttgtcctggagtgttgtttg |
223 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
35642758 |
ttgtcctggagtgttgtttg |
35642777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 1121 - 1340
Alignment:
| Q |
4 |
aaatctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttggg |
103 |
Q |
| |
|
||||| |||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
1121 |
aaatcaatggaagatatcaaactaaatggctatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagatccttcaagttggg |
1220 |
T |
|
| Q |
104 |
aacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagagg |
203 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1221 |
atcaacctctagagtttaaaccagaaaggtttatgaacagttcaatagattataaaggattggattttgaacttattccatttggagcaggaaggagagg |
1320 |
T |
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| Q |
204 |
ttgtcctggagtgttgtttg |
223 |
Q |
| |
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|||||||||||||||||||| |
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| T |
1321 |
ttgtcctggagtgttgtttg |
1340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 23024413 - 23024380
Alignment:
| Q |
56 |
aggtaatagtcaatgcttgggcaattgcaagaga |
89 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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| T |
23024413 |
aggtgatagtcaatgcttgggcaattgcaagaga |
23024380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 23032840 - 23032807
Alignment:
| Q |
56 |
aggtaatagtcaatgcttgggcaattgcaagaga |
89 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
23032840 |
aggtgatagtcaatgcttgggcaattgcaagaga |
23032807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 23039182 - 23039149
Alignment:
| Q |
56 |
aggtaatagtcaatgcttgggcaattgcaagaga |
89 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
23039182 |
aggtgatagtcaatgcttgggcaattgcaagaga |
23039149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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