View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_29 (Length: 224)
Name: NF8324_low_29
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 3111018 - 3110858
Alignment:
| Q |
15 |
gtgagaagaataaggtcattgagtgagtataactggagacaatatgtggctgatgaagtaactgaaatgaatggtcatttactgaaatatccacttgagg |
114 |
Q |
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| T |
3111018 |
gtgagaagaataaggtcattgagtgagtataactggagacaatatgtggctgatgaagtaactgaaatgaatggtcatttactgaaatatccacttgagg |
3110919 |
T |
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| Q |
115 |
ttgattcaaagggtattgtgaagcctcttgttggctgtgaaacatttcctgatgttggtgg |
175 |
Q |
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| T |
3110918 |
ttgattcaaagggtattgtgaagcctcttgttggctgtgaaacatttcctgatgttggtgg |
3110858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 3117514 - 3117354
Alignment:
| Q |
15 |
gtgagaagaataaggtcattgagtgagtataactggagacaatatgtggctgatgaagtaactgaaatgaatggtcatttactgaaatatccacttgagg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3117514 |
gtgagaagaataaggtcattgagtgagtataactggagacaatatgtggctgatgaagtaactgaaatgaatggtcatttactgaaatatccacttgagg |
3117415 |
T |
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| Q |
115 |
ttgattcaaagggtattgtgaagcctcttgttggctgtgaaacatttcctgatgttggtgg |
175 |
Q |
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| T |
3117414 |
ttgattcaaagggtattgtgaagcctcttgttggctgtgaaacatttcctgatgttggtgg |
3117354 |
T |
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