View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_low_3 (Length: 610)

Name: NF8324_low_3
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_low_3
NF8324_low_3
[»] chr8 (2 HSPs)
chr8 (13-345)||(12930707-12931041)
chr8 (13-344)||(12935453-12935786)
[»] chr1 (4 HSPs)
chr1 (13-344)||(34907170-34907503)
chr1 (366-575)||(2839207-2839423)
chr1 (459-575)||(2373926-2374041)
chr1 (459-575)||(2382030-2382145)
[»] chr4 (9 HSPs)
chr4 (13-345)||(14173968-14174303)
chr4 (13-345)||(14178722-14179057)
chr4 (13-345)||(28611567-28611902)
chr4 (13-345)||(28606805-28607140)
chr4 (13-344)||(44161617-44161949)
chr4 (13-344)||(11104500-11104829)
chr4 (44-345)||(48826701-48827000)
chr4 (63-231)||(24726288-24726454)
chr4 (147-317)||(48708086-48708255)
[»] chr2 (2 HSPs)
chr2 (13-345)||(8539214-8539549)
chr2 (88-198)||(42506060-42506169)
[»] chr7 (6 HSPs)
chr7 (13-344)||(37040426-37040760)
chr7 (24-345)||(15290273-15290595)
chr7 (43-344)||(12099060-12099361)
chr7 (23-183)||(12082055-12082215)
chr7 (88-321)||(2757236-2757469)
chr7 (254-344)||(12084661-12084751)
[»] chr5 (4 HSPs)
chr5 (13-346)||(42910991-42911323)
chr5 (13-344)||(29106878-29107209)
chr5 (161-318)||(38997164-38997320)
chr5 (254-345)||(38994698-38994789)
[»] chr3 (4 HSPs)
chr3 (13-126)||(51302192-51302306)
chr3 (366-574)||(1525696-1525910)
chr3 (262-345)||(51302937-51303020)
chr3 (212-270)||(51302304-51302361)
[»] chr6 (2 HSPs)
chr6 (161-344)||(2100199-2100379)
chr6 (120-167)||(2100724-2100771)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 12930707 - 12931041
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||  ||| |||||||  | ||||    
T  12930707 cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaac 12930806  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  12930807 actatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 12930906  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca-ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttta 310  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||    
T  12930907 ctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaatttta 12931006  T
Q  311 atttacacttgagttaagctcgtcgagcccaacaa 345  Q
    ||||||||||| |||||||||||||||||||||||    
T  12931007 atttacacttgcgttaagctcgtcgagcccaacaa 12931041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 12935453 - 12935786
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||  ||| |||||||  | ||||    
T  12935453 cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaac 12935552  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  12935553 actatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 12935652  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca-ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttta 310  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| | ||||||| ||||| ||||||||    
T  12935653 ctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaatttta 12935752  T
Q  311 atttacacttgagttaagctcgtcgagcccaaca 344  Q
    ||||||||||| ||||||||||||||||||||||    
T  12935753 atttacacttgcgttaagctcgtcgagcccaaca 12935786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 34907170 - 34907503
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||  ||| |||||||  | ||||    
T  34907170 cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaac 34907269  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  34907270 actatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 34907369  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca-ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttta 310  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||    
T  34907370 ctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaatttta 34907469  T
Q  311 atttacacttgagttaagctcgtcgagcccaaca 344  Q
    ||||||||||| ||||||||||||||||||||||    
T  34907470 atttacacttgcgttaagctcgtcgagcccaaca 34907503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 366 - 575
Target Start/End: Original strand, 2839207 - 2839423
Alignment:
Q  366 tgaatacaaaatagttatatatccttatgaaggtagtattttgggaaaacnnnnnnncaagccaaagaac----aggtaacatatcaatcttctcaaaga 461  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||       ||| |||  ||||    || ||||||| |||||||||||||||    
T  2839207 tgaatacaaaatagttataaatccttatgaaggtagtattttgggaaaacagaaaaacaacccacggaacagagagataacataacaatcttctcaaaga 2839306  T
Q  462 gaga----cacacaaaggagaacatactagtaca---attattataatcatgaaaagc---atagtgcaaatcttcttagtagtccttctctaattcttg 551  Q
    ||||    ||||||||||||||||||||| ||||   |||||||| |||||||||| |   ||||||||||||       ||||||||||||||||||||    
T  2839307 gagagaggcacacaaaggagaacatactaatacaattattattattatcatgaaaaacataatagtgcaaatc-------tagtccttctctaattcttg 2839399  T
Q  552 aaatattcattcctccttcgcctt 575  Q
    ||||||||||| |||||| |||||    
T  2839400 aaatattcattactcctttgcctt 2839423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 575
Target Start/End: Complemental strand, 2374041 - 2373926
Alignment:
Q  459 agagagacacacaaaggagaacatactagtacaatta---ttataatcatgaaaagc---atagtgcaaatcttcttagtagtccttctctaattcttga 552  Q
    |||||| ||||||||||||||||||||| ||||||||   |||| |||||||||| |   ||||||||||||       |||||||||||||||||||||    
T  2374041 agagaggcacacaaaggagaacatactaatacaattattattattatcatgaaaaacataatagtgcaaatc-------tagtccttctctaattcttga 2373949  T
Q  553 aatattcattcctccttcgcctt 575  Q
    ||||||||||  ||||| |||||    
T  2373948 aatattcattaatcctttgcctt 2373926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 575
Target Start/End: Original strand, 2382030 - 2382145
Alignment:
Q  459 agagagacacacaaaggagaacatactagtaca---attattataatcatgaaaagc---atagtgcaaatcttcttagtagtccttctctaattcttga 552  Q
    |||||| ||||||||||||||||||||| ||||   |||||||| |||||||||| |   ||||||||||||       |||||||||||||||||||||    
T  2382030 agagaggcacacaaaggagaacatactaatacaattattattattatcatgaaaaacataatagtgcaaatc-------tagtccttctctaattcttga 2382122  T
Q  553 aatattcattcctccttcgcctt 575  Q
    ||||||||||  ||||| |||||    
T  2382123 aatattcattaatcctttgcctt 2382145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 14173968 - 14174303
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| |||||||  | ||||    
T  14173968 cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaac 14174067  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  14174068 actatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 14174167  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttt 309  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||| ||| ||||| ||||||||||||||| |||||||    
T  14174168 ctcggtattagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggattttggaatttt 14174267  T
Q  310 aatttacacttgagttaagctcgtcgagcccaacaa 345  Q
    |||||||||||| |||||||||||||||||||||||    
T  14174268 aatttacacttgcgttaagctcgtcgagcccaacaa 14174303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 14178722 - 14179057
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| |||||||  | ||||    
T  14178722 cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaac 14178821  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  14178822 actatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 14178921  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttt 309  Q
    |||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||||||||| ||| ||||| ||||||||||||||| |||||||    
T  14178922 ctcggtattagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggattttggaatttt 14179021  T
Q  310 aatttacacttgagttaagctcgtcgagcccaacaa 345  Q
    |||||||||||| |||||||||||||||||||||||    
T  14179022 aatttacacttgcgttaagctcgtcgagcccaacaa 14179057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 28611902 - 28611567
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| |||||||  | ||||    
T  28611902 cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaac 28611803  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  28611802 actatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 28611703  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttt 309  Q
    ||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||    
T  28611702 ctcggtattagagggtttttcacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaatttt 28611603  T
Q  310 aatttacacttgagttaagctcgtcgagcccaacaa 345  Q
    |||||||||||| |||||||||||||||||||||||    
T  28611602 aatttacacttgcgttaagctcgtcgagcccaacaa 28611567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 28607140 - 28606805
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| |||||||  | ||||    
T  28607140 cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaac 28607041  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  28607040 actatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 28606941  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttt 309  Q
    ||||||||||||||||||| |||||||||||||||| || |  ||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||    
T  28606940 ctcggtattagagggtttttcacgttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaatttt 28606841  T
Q  310 aatttacacttgagttaagctcgtcgagcccaacaa 345  Q
    |||||||||||| |||||||||||||||||||||||    
T  28606840 aatttacacttgcgttaagctcgtcgagcccaacaa 28606805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 44161617 - 44161949
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||| |  | ||||    
T  44161617 cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaac 44161716  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  44161717 actatattgtatctcttgtgtgtgtaagagagtggagagaat--tgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 44161814  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttt 309  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  44161815 ctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattttggaatttt 44161914  T
Q  310 aatttacacttgagttaagctcgtcgagcccaaca 344  Q
    |||||||||||| ||||||||||||||||||||||    
T  44161915 aatttacacttgcgttaagctcgtcgagcccaaca 44161949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 11104500 - 11104829
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaac 111  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||   |||||    
T  11104500 cagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaac 11104599  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||| ||| ||    
T  11104600 actatattgtatctctt-tgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tttacc 11104697  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaa 311  Q
    |||| ||||||||| ||||| | ||||||||||||| |||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||    
T  11104698 ctcgatattagaggattttctatgttaaatattggtgttca-tttttatcgctacagctgcgctgcaagatccaatctcttttggattttggaattttaa 11104796  T
Q  312 tttacacttgagttaagctcgtcgagcccaaca 344  Q
    |||||||||| ||||||||||||||||||||||    
T  11104797 tttacacttgcgttaagctcgtcgagcccaaca 11104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 44 - 345
Target Start/End: Complemental strand, 48827000 - 48826701
Alignment:
Q  44 tatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaacactatattgtatctcttgtgtgtgtaagaga 142  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||||||||  |||||  | |||||||||||||||||||||||||||||||||||    
T  48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgtaagaga 48826901  T
Q  143 gtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaata 242  Q
    | ||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  48826900 gcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaata 48826802  T
Q  243 ttggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaa 342  Q
    ||||| ||| |||| |||||||||||||||||| ||| ||||||||||  ||| |||||  |||||||||||||| ||| |||||||||||||| |||||    
T  48826801 ttggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatcccaa 48826704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 24726454 - 24726288
Alignment:
Q  63 aggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaa-cactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaat 161  Q
    |||||||||||||||||| |||| |||||||||||| |||||  |||| || |||| ||||||||  ||||  |||||||| || |||||||||| | ||    
T  24726454 aggtgttgtaaaataataacatttgaataggagtgg-tctcacggaaaacaatatagtgtatctc--gtgtcggtaagagaatggagagaatattattat 24726358  T
Q  162 attcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttc 231  Q
     ||||| |||||| |||||||| |||||||||||||| ||||| |||||||| | ||||||| |||||||    
T  24726357 gttctttaatataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc 24726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 147 - 317
Target Start/End: Complemental strand, 48708255 - 48708086
Alignment:
Q  147 agagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattgg 246  Q
    |||||||||||||||||| || |||||| || ||||| |||  ||||||||| ||||||||||| ||  |||||| || ||||| || ||||||||||||    
T  48708255 agagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattgg 48708156  T
Q  247 tattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttaca 317  Q
    |||| |  ||||||||| ||| ||||| |  || || |||| ||||||  ||||| |||||||||||||||    
T  48708155 tattta-attttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca 48708086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 8539214 - 8539549
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaaca 112  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||  ||||||    
T  8539214 cagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacggaaaca 8539313  T
Q  113 ctata---ttgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggttttt 209  Q
    |||||   |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  8539314 ctataatattgtatctcttgtgtgtgtaagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgattttt 8539413  T
Q  210 ccctcggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttt 309  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||| ||| |||||||||||||| || ||| |||||||    
T  8539414 ccctcggtattagagggttttccacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctcttttagaatttggaatttt 8539513  T
Q  310 aatttacacttgagttaagctcgtcgagcccaacaa 345  Q
    |||||||||||| |||||||||||||||||||||||    
T  8539514 aatttacacttgcgttaagctcgtcgagcccaacaa 8539549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 42506060 - 42506169
Alignment:
Q  88 aataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctt 186  Q
    |||||||| |||||||| |||||||| || |||| ||| ||| ||||  |||||||||||| | |||| ||||||||| || ||||||||  ||||||||    
T  42506060 aataggagcgggtctcactagaaacattaaattgcatcgcttatgtg--taagagagtgaataaaatactgtaatattatttaatatagtaaaatatctt 42506157  T
Q  187 tcagagtttgtc 198  Q
    || || ||||||    
T  42506158 tcggaatttgtc 42506169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 37040760 - 37040426
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaa-c 111  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| |||||||  |||| |    
T  37040760 cagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaac 37040661  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  37040660 actatattgtatctcttgtgtgtgtgagagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttcc 37040561  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttt 309  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||| ||||| ||| ||||||||||| |||||||    
T  37040560 ctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaatttt 37040461  T
Q  310 aatttacacttgagttaagctcgtcgagcccaaca 344  Q
    |||||||||||| ||||||||||||||||||||||    
T  37040460 aatttacacttgcgttaagctcgtcgagcccaaca 37040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 24 - 345
Target Start/End: Original strand, 15290273 - 15290595
Alignment:
Q  24 ggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatagaaacactatattgtat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  15290273 ggaaaaatacaccgggtgggtatcatctctataacttctaggtgctg--aaataatagcattcgaataggagtgggtctcacggaaacactatattgtat 15290370  T
Q  124 ctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattaga 223  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||| | |||||||||||||    
T  15290371 ctcttgtgtgtgtaagagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtattaga 15290470  T
Q  224 gggttttccacgttaaatattggtattca--ttttttatcgctaccgctgcgctacaaaatccaatctc-ttttggatttttgaattttaatttacactt 320  Q
    |||||||||||||||||||||||| ||||  |||||||||||||  |||||||| ||| |||||||||| |||||||||||  |||||||||||||| ||    
T  15290471 gggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttggattttgaaattttaatttacaatt 15290570  T
Q  321 gagttaagctcgtcgagcccaacaa 345  Q
    | |||||||||||||||||||||||    
T  15290571 gcgttaagctcgtcgagcccaacaa 15290595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 43 - 344
Target Start/End: Original strand, 12099060 - 12099361
Alignment:
Q  43 gtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtgtaagag 141  Q
    |||||||||||||||||| |||||||| |||||||||| |||| ||||||||||| |||||| ||||||||| ||||||| ||||||||| |||||||||    
T  12099060 gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag 12099159  T
Q  142 agtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaat 241  Q
    |||| ||||||||||||||||||||| |||||||| |||  | |||| ||||||||||| |||||||||| |||  ||||||||||||| ||||| ||||    
T  12099160 agtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaaat 12099259  T
Q  242 attggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagccca 341  Q
    |||| | |||| |||||||||||| || || ||| ||| |||  |||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||    
T  12099260 attgcttttca-tttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcgagccca 12099358  T
Q  342 aca 344  Q
    |||    
T  12099359 aca 12099361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 12082055 - 12082215
Alignment:
Q  23 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcat-agaaacactatattgt 121  Q
    |||||||||| | ||||| ||||| |||||||||||||||||| | | |||||||||| |||| ||||||||| | ||||||| ||||||||||||||||    
T  12082055 gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgt 12082154  T
Q  122 atctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatat 183  Q
    ||||||| |  ||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  12082155 atctcttttccgtgtaagagagtggagaaaatattgtaatattctt-aatatagtggaatat 12082215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 88 - 321
Target Start/End: Complemental strand, 2757469 - 2757236
Alignment:
Q  88 aataggagtgggtctca-tagaaacactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctt 186  Q
    |||||||||| |||||| || |||||||||||||||||||||| ||||| ||||||||| |||||||| || |||||| |||||||||||||||||| ||    
T  2757469 aataggagtgtgtctcactaaaaacactatattgtatctcttgagtgtgaaagagagtggagagaatagtgcaatatttttaaatatagtggaatat-tt 2757371  T
Q  187 tcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaa 286  Q
    ||| | |||||| | |||||||||| |  | |||| |||| ||| ||  |||||||||||| || | ||||||||| ||  ||| | || || ||| |||    
T  2757370 tcaaaatttgtctcatggtttttccttaagcattaaaggggttttcatattaaatattggtgttaaatttttatcgttattgctacactgcataattcaa 2757271  T
Q  287 tctcttttggatttttgaattttaatttacacttg 321  Q
    | ||||||| ||||| |||||||||||||||||||    
T  2757270 tttcttttgaattttggaattttaatttacacttg 2757236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 12084661 - 12084751
Alignment:
Q  254 tttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaaca 344  Q
    ||||||||||||||| |||||||||| ||||||| ||| |||||||||  ||||||||||||| || | ||||||||||| ||||||||||    
T  12084661 tttttatcgctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca 12084751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 42911323 - 42910991
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaac 111  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||| |||||| ||| |||||||  | ||||    
T  42911323 cagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaac 42911224  T
Q  112 actatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttcc 211  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  42911223 actatattgtatcttttgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaatat-tttcggagtttgtcccgtggtttttcc 42911125  T
Q  212 ctcggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaa 311  Q
    |||||||||||||||||||||| ||||||||||||| |||| ||||||||| | |||||||||| ||| ||| |||||||||||||||||  ||||||||    
T  42911124 ctcggtattagagggttttccatgttaaatattggtgttca-tttttatcgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaa 42911026  T
Q  312 tttacacttgagttaagctcgtcgagcccaacaaa 346  Q
    ||| |||||| ||||||||||||||||||||||||    
T  42911025 tttccacttgcgttaagctcgtcgagcccaacaaa 42910991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 29107209 - 29106878
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctcatag-aaa 110  Q
    ||||||| ||||||||||||||  ||||||| |||||||| ||||||||||||||| |  |||||||||||||| |||||| ||| |||||||  | |||    
T  29107209 cagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaa 29107110  T
Q  111 cactatattgtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttc 210  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  29107109 cactat-ttgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttc 29107011  T
Q  211 cctcggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaatttta 310  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  29107010 cctcggtattagagggttttccacgttaaatattggtgttca-tttttaacgctaccgctgcgctgcaagatccaatcttttttggattttggaatttta 29106912  T
Q  311 atttacacttgagttaagctcgtcgagcccaaca 344  Q
    |||||||||||  |||||||| |||| |||||||    
T  29106911 atttacacttgcattaagctcctcgatcccaaca 29106878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 318
Target Start/End: Complemental strand, 38997320 - 38997164
Alignment:
Q  161 tattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtattcattttttat 260  Q
    ||||||| |||||| |||| ||| |||  ||||||||||||| |||||||  ||| ||||||||||||||| |||| |||||||| | ||| ||||||||    
T  38997320 tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc-ttttttat 38997222  T
Q  261 cgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacac 318  Q
    |  |  || ||| || ||| ||  ||| ||||||||||| | ||||||||||||||||    
T  38997221 cattgtcgatgcacttcaagatttaatttcttttggattctggaattttaatttacac 38997164  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 38994789 - 38994698
Alignment:
Q  254 tttttatcgctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaacaa 345  Q
    ||||||||  ||||||||| || ||| ||||||| |  ||||| |||| ||||||||||||||||| |  ||||| ||||| ||||||||||    
T  38994789 tttttatcattaccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaa 38994698  T

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Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 51302192 - 51302306
Alignment:
Q  13 cagagagggtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgttgtaaaataatagcattcgaataggagtgggtctca-tagaaac 111  Q
    ||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||   |||||    
T  51302192 cagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaac 51302291  T
Q  112 actatattgtatctc 126  Q
    |||||||||||||||    
T  51302292 actatattgtatctc 51302306  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 366 - 574
Target Start/End: Original strand, 1525696 - 1525910
Alignment:
Q  366 tgaatacaaaatagttatatatccttatgaaggtagtattttgggaaaacnnnnnnncaagccaaagaacagg--taacatatcaatcttctcaaagaga 463  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||       ||| ||| |||||||   |||||||||||  ||||| ||||||    
T  1525696 tgaatccaaaatagttataaatccttatgaaggtagtattttgggaaaacagaaa--caacccagagaacagagataacatatcaaaattctccaagaga 1525793  T
Q  464 gacacacaaaggagaaca--tactagtacaattatta-taatcatgaaaagcata---gtgcaaatcttcttagtagtccttctctaattcttgaaatat 557  Q
    || |||||||||| | |   ||| | ||  |||| || |||| || |||| ||||   ||||||||||||||||||||||||||||||||||||||||||    
T  1525794 gatacacaaaggatagctggtacaattaatattaataataattattaaaaacataacagtgcaaatcttcttagtagtccttctctaattcttgaaatat 1525893  T
Q  558 tcattcctccttcgcct 574  Q
    |||| ||||||||||||    
T  1525894 tcatccctccttcgcct 1525910  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 262 - 345
Target Start/End: Original strand, 51302937 - 51303020
Alignment:
Q  262 gctaccgctgcgctacaaaatccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaacaa 345  Q
    |||||||||||||| ||| ||||||||| |||||||||||  ||||||||||||||||||  ||||||||||||| ||||||||    
T  51302937 gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaa 51303020  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 51302304 - 51302361
Alignment:
Q  212 ctcggtattagagggttttccacgttaaatattggtattcattttttatcgctaccgct 270  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  51302304 ctcggtattagagggttttccacgttaaatattggtgttca-tttttatcgctaccgct 51302361  T

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Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 161 - 344
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
Q  161 tattcttaaatatagtggaatatctttcagagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtattcattttttat 260  Q
    ||||||| ||||||||||||||| |||| ||||||| |||   ||||||| |||  ||||| |||||||||||| |||||||||| | ||||  ||||||    
T  2100379 tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttca-attttat 2100284  T
Q  261 cgctaccgctgcgctacaaaa-tccaatctcttttggatttttgaattttaatttacacttgagttaagctcgtcgagcccaaca 344  Q
    |  || || || ||| ||||| || |||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  2100283 cattatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca 2100199  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 2100771 - 2100724
Alignment:
Q  120 gtatctcttgtgtgtgtaagagagtgaagagaatattgtaatattctt 167  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  2100771 gtatctcttgtgtatgtaagagagtggagagaatattgtaatattctt 2100724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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