View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_32 (Length: 209)
Name: NF8324_low_32
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_32 |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 35649922 - 35650103
Alignment:
| Q |
1 |
ggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtgg |
100 |
Q |
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| T |
35649922 |
ggtactgatactacttacacagtcctagaatggacaatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtgg |
35650021 |
T |
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| Q |
101 |
ttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgcct |
182 |
Q |
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| T |
35650022 |
ttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaagctgtgatcaaagaaactcttcgcct |
35650103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 35678002 - 35678183
Alignment:
| Q |
1 |
ggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtgg |
100 |
Q |
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| T |
35678002 |
ggtactgatactacttacacagtcctagaatggacaatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtgg |
35678101 |
T |
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| Q |
101 |
ttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgcct |
182 |
Q |
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| T |
35678102 |
ttggtaacataactcatgtaactgatgatgatttggttattatgaactacttgaaagctgtgatcaaagaaactcttcgcct |
35678183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 35642345 - 35642529
Alignment:
| Q |
1 |
ggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtgg |
100 |
Q |
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| T |
35642345 |
ggtactgatactacctacacagtcttagaatgggcaatgacagaactgttaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtgg |
35642444 |
T |
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| Q |
101 |
ttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgccttca |
185 |
Q |
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| T |
35642445 |
taggtaatagaactcatgtaactgaaaaggatttggttaacatgaactacttgaaggctgtgattaaagaaactcttcgccttca |
35642529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 35656614 - 35656783
Alignment:
| Q |
13 |
acctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggttggtaacagaa |
112 |
Q |
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| T |
35656614 |
acctacacagttctagaatgggcgatgacagaactattaagacaccaaactgtgatgcataaattgcaagatgagttgaggaatgtggttggtaacaaaa |
35656713 |
T |
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| Q |
113 |
ctcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgcct |
182 |
Q |
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| T |
35656714 |
ctcatgtaactgaggaggatttggttaacatgaactacttgaaagctgtgatcaaagaaactcttcgcct |
35656783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 908 - 1089
Alignment:
| Q |
1 |
ggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtgg |
100 |
Q |
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||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
908 |
ggtactgatactacctacacagttctagaatgggcaatgacagaattattaagacaccaaactgtgatgcataaattgcaagatgaggtgagaactgtgg |
1007 |
T |
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| Q |
101 |
ttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgcct |
182 |
Q |
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| T |
1008 |
ttggcaacaaaactcatgtaactgaagatgatttggttaatatgaactacttgaaagctgtgatcaaagaaactcttcgcct |
1089 |
T |
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