View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8324_low_5 (Length: 509)
Name: NF8324_low_5
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 26529503 - 26529017
Alignment:
| Q |
1 |
caatgcaatggtaggattccgaagtccaaaaggaatgttccgtcctttttctttcaaatattggannnnnnnng-tcctatttgattggaatggaaatag |
99 |
Q |
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| T |
26529503 |
caatgcaatggtaggattccaaagtccaaaaggaatgttccgtcctttttctttcaaatattggatattttttggtcctatttgtttggaatggaaatag |
26529404 |
T |
|
| Q |
100 |
agagacacattatctgcattagcaataatgttgtgtacgttacaagaaaacattctaaaatgaaactcaaaatcatttgcactataatttgtttggaatg |
199 |
Q |
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| T |
26529403 |
aaagacacattatctgcattagcaataatgttgtgtacgttacaagaaaactttctaaaatgaaactcaaaatcatttgcactataatttgtttggaatg |
26529304 |
T |
|
| Q |
200 |
gaaatagataaatacattatctgcatttgcactataaaatggttgcagccattgatgacaaaggttnnnnnnngaaagatgacgatgaagaaaagcaaga |
299 |
Q |
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| T |
26529303 |
gaaatagatagacacattatctgcatttgcactataaaatggttgcagccattgatgataaaggttaaaaaaagaaagatgacgatgaagaaaagcaaga |
26529204 |
T |
|
| Q |
300 |
tggtggaagcatgaaatagagaatatcaatttgataccatactaccatataaatatttggaataatgaacaaacaaggttttgtttgacgtgcacaaata |
399 |
Q |
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| T |
26529203 |
tggtggaagcatgaaatagagaatatcaatttgataccataccaccatataaatatttggaataatgaacaaacaaggttttgtttgacgtgcacaaata |
26529104 |
T |
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| Q |
400 |
aaatgatattgcaccatgcataaatgtgtttttcattgttatatcaacgagagtggatattgtgtcaaagaagggaaaagtcaagtt |
486 |
Q |
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| T |
26529103 |
aaatgatattgcaccatgcataaatgtttttttcatcgttatatcaatgagagtcgatattgtgtcaaagaagggaaaagtcaagtt |
26529017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 29213015 - 29213073
Alignment:
| Q |
374 |
aaggttttgtttgacgtgcacaaataaaatgatattgcaccatgcataaatgtgttttt |
432 |
Q |
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|||||||||| | | |||||||| ||||||||| |||||||||||| | |||||||||| |
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| T |
29213015 |
aaggttttgtctaatgtgcacaactaaaatgatcttgcaccatgcacacatgtgttttt |
29213073 |
T |
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