View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8324_low_6 (Length: 462)
Name: NF8324_low_6
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8324_low_6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 4 - 426
Target Start/End: Original strand, 8528327 - 8528754
Alignment:
| Q |
4 |
tcattttctacacctccatccacacgaaagtataaagaaaatttataagatgtaattagtaacaaaagattgtgtccacgtgannnnnnncccattaact |
103 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
8528327 |
tcattttctacacctccatcaacacgaaagtataaagaaaatttataagatgtaattagtaacaaaagattgtgtccacatgatttttttcccattaact |
8528426 |
T |
|
| Q |
104 |
attaaagccaaagatgtaatta--ggtggtatatattagacaacagaaaagaactaaaattataacaaatatataca---tcataaatatattagctgtg |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8528427 |
attaaagccaaagatgtaattaaaggtggtatatattagacaacagaaaagaactaaaaatataacaaatatatacaacatcataaatatattagctgtg |
8528526 |
T |
|
| Q |
199 |
aaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgttgtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8528527 |
aaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgttgtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaa |
8528626 |
T |
|
| Q |
299 |
tgtaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatga |
398 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8528627 |
tggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatga |
8528726 |
T |
|
| Q |
399 |
cttgtaaggaagcatcaaccatcagatt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
8528727 |
cttgtaaggaagcatcaaccatcagatt |
8528754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 8534892 - 8535122
Alignment:
| Q |
4 |
tcattttctacacctccatccacacgaaagtataaagaaaatttataagatgtaattagtaacaaaagattgtgtccacgtgannnnnnncccattaact |
103 |
Q |
| |
|
||||||||| | ||||| || |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
8534892 |
tcattttcttctcctccgtcaacacgaaagtataaaggaaagttataagatgtaattagtaataaaagattgtgtccacgtgattttttttccattaact |
8534991 |
T |
|
| Q |
104 |
attaaagcca--aagatgtaatta--ggtggtatatattagacaacagaaaagaactaaaattataacaaatatataca---tcataaatatattagctg |
196 |
Q |
| |
|
|| | ||||| |||||||||||| |||||||||||||||| || ||||| ||||||| |||||||||||||| ||| ||||||||||||||| || |
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|
| T |
8534992 |
atcagagccacaaagatgtaattaaaggtggtatatattagataatggaaaataactaaatttataacaaatataaacaacttcataaatatattagttg |
8535091 |
T |
|
| Q |
197 |
tgaaagcaaatgattgacgaaacatgacaac |
227 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| |
|
|
| T |
8535092 |
taaaagcaaatgattgacgaaacatcacaac |
8535122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 317 - 426
Target Start/End: Original strand, 8535183 - 8535294
Alignment:
| Q |
317 |
agtttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgac-ttgtaaggaagcatc |
414 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||||||| |||||||| |||||| |
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|
| T |
8535183 |
agtttaaaatataactggtaacataggaaacttacagaagttcctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatc |
8535282 |
T |
|
| Q |
415 |
aaccatcagatt |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8535283 |
aaccatcagatt |
8535294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 1600942 - 1600713
Alignment:
| Q |
5 |
cattttctacacctccatccacacgaaagtataaagaaaatttataagatgtaattagtaacaaaagattgtgtccacgtgannnnnnncccattaacta |
104 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||| || ||||||| |||||||||||||||||||||||| |||||||||| || |||||||| |
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|
| T |
1600942 |
cattttctcctcctccatcaacacgaaagtatataggaaattta---gatgtaattagtaacaaaagattgcgtccacgtgatttttttcctattaacta |
1600846 |
T |
|
| Q |
105 |
ttaaagccaaagatgtaatt--aggtggtatatattagacaacagaaaagaactaaaattataacaaatatat-------acatcataaatatattagct |
195 |
Q |
| |
|
| | ||||| | |||||||| |||||||| |||||||| ||| |||| ||||| |||||||| ||| | || ||| |||||||||||||| | |
|
|
| T |
1600845 |
tcagagccagatatgtaattaaaggtggtagatattagataac-caaaaaaactataattataaaaaaaaaatataaacaacaccataaatatattagtt |
1600747 |
T |
|
| Q |
196 |
gtgaaagcaaatgattgacgaaacatgacaacct |
229 |
Q |
| |
|
|| ||||||| |||||| ||||||| ||||||| |
|
|
| T |
1600746 |
gtaaaagcaattgattgcggaaacatcacaacct |
1600713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 8640893 - 8640948
Alignment:
| Q |
29 |
gaaagtataaagaaaatttataagatgtaattagtaacaaaagattgtgtccacgt |
84 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
8640893 |
gaaagtataaaggaaatttataagatgtcattagtaacgaaagattgtgtccacgt |
8640948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 9075109 - 9075019
Alignment:
| Q |
320 |
ttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaa |
409 |
Q |
| |
|
|||||||||||||| ||||||| |||||| || | |||||||||||| |||| || ||||||| ||| ||||||||||||||||| |||| |
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|
| T |
9075109 |
ttaaaatataagtggtaacataagaaactcactcgagtccctttgaaaactcatcttatgattaaaattaattactatgacttgtacggaa |
9075019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 426
Target Start/End: Complemental strand, 8548562 - 8548409
Alignment:
| Q |
273 |
taacaacatgtcttcttttctccaaatgtaatggaaaaatagtaagtttaaaatataagt-gtaacataggaaacttacacaagtccctttgaatactcg |
371 |
Q |
| |
|
|||||||| | |||| ||| ||||||| |||| ||||||| ||||||||| |||||| |||||| | ||| | ||||| | |||||||||||||| |
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|
| T |
8548562 |
taacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaa-tataagcagtaacacaaaaaattcacacatgaccctttgaatactca |
8548464 |
T |
|
| Q |
372 |
actcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt |
426 |
Q |
| |
|
|| ||||||| ||| ||||||||||| || || || |||||||||||||||||| |
|
|
| T |
8548463 |
tcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagatt |
8548409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 1600670 - 1600601
Alignment:
| Q |
353 |
aagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatca |
422 |
Q |
| |
|
||||||||||||| ||| | || ||||||| ||| ||||||||||||||||| || | |||| ||||||| |
|
|
| T |
1600670 |
aagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcgaccatca |
1600601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 40 - 426
Target Start/End: Original strand, 9442513 - 9442915
Alignment:
| Q |
40 |
gaaaatttataagatgtaattagtaacaaaagattgtgtccacgtgannnnnnncccattaactattaaagccaaagatgtaatta--ggtggtatatat |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9442513 |
gaaaatttataagatgtaattagtaacaaaagattgtgtccacgtgatttttttcccattaactattaaagccaaagatgtaattaaaggtggtatatat |
9442612 |
T |
|
| Q |
138 |
tagacaacagaaaagaactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctc |
234 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9442613 |
tagacaacagaaaagaactaaaaatataacaaatatatacaacatcataaatatattagctgcgaaagcaaatgattgacgaaacatcacaacctttctc |
9442712 |
T |
|
| Q |
235 |
-----------caacatgtcgttgtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatgtaatggaaaaatagtaagtttaa |
323 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
9442713 |
caacatgtctccaacatgtcgttgtgagaatatatcaaccgaagtaacctaacaacatgttttcttttctccaaatggaatggcaaaatagtaagtttaa |
9442812 |
T |
|
| Q |
324 |
aatataagtgtaacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcag |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9442813 |
aatataagtgtaacataggaaacttacacaagtccctttgaatactcatctcatgattacaatcaattactatgacttgtaaagaagcatcaaccatcag |
9442912 |
T |
|
| Q |
424 |
att |
426 |
Q |
| |
|
||| |
|
|
| T |
9442913 |
att |
9442915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 48362390 - 48362240
Alignment:
| Q |
16 |
cctccatccacacgaaagtataaagaaaatttataagatgtaattagtaacaaaagattgtgtccacgtgannnnnnncccattaactattaaagccaaa |
115 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| ||||| || ||||||| |||| ||| ||||||||||| | || || | |
|
|
| T |
48362390 |
cctccatcaacacgaaagtataaaggaaatttataagatgtaattggtaacgaaggattgtgcccacctgattttttttccattaactatcagag-caga |
48362292 |
T |
|
| Q |
116 |
gatgtaatt--aggtggtatatattagacaacagaaaagaactaaaattataa |
166 |
Q |
| |
|
||||||||| |||||||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
48362291 |
gatgtaattaaaggtggtagatattagataa-ggaaaataactaaaattataa |
48362240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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