View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8324_low_7 (Length: 459)

Name: NF8324_low_7
Description: NF8324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8324_low_7
NF8324_low_7
[»] chr5 (12 HSPs)
chr5 (48-391)||(24652904-24653256)
chr5 (390-453)||(24652116-24652179)
chr5 (51-162)||(3535922-3536034)
chr5 (42-87)||(41181816-41181861)
chr5 (80-164)||(6447494-6447581)
chr5 (41-144)||(8934797-8934900)
chr5 (115-162)||(5932069-5932116)
chr5 (50-109)||(6291047-6291105)
chr5 (51-162)||(40250163-40250275)
chr5 (48-161)||(11246477-11246591)
chr5 (48-116)||(22687864-22687931)
chr5 (115-163)||(36742018-36742066)
[»] chr6 (12 HSPs)
chr6 (52-171)||(22730688-22730809)
chr6 (41-162)||(9031763-9031886)
chr6 (41-158)||(4844144-4844262)
chr6 (69-162)||(24256913-24257008)
chr6 (69-158)||(32540954-32541045)
chr6 (41-162)||(26669635-26669757)
chr6 (48-160)||(3029965-3030079)
chr6 (115-161)||(30668235-30668281)
chr6 (81-162)||(25064684-25064767)
chr6 (71-158)||(30833018-30833107)
chr6 (80-162)||(19135926-19136010)
chr6 (41-94)||(34571444-34571497)
[»] chr1 (22 HSPs)
chr1 (52-162)||(41998095-41998205)
chr1 (48-162)||(18179325-18179440)
chr1 (41-162)||(9931084-9931206)
chr1 (52-168)||(37262093-37262209)
chr1 (48-162)||(2643798-2643913)
chr1 (52-158)||(9769567-9769674)
chr1 (41-162)||(9410304-9410425)
chr1 (71-159)||(43020611-43020701)
chr1 (71-162)||(9768814-9768907)
chr1 (41-159)||(13941319-13941438)
chr1 (52-148)||(195055-195152)
chr1 (52-148)||(5684133-5684230)
chr1 (101-159)||(8758404-8758463)
chr1 (50-162)||(42908768-42908881)
chr1 (51-162)||(7906312-7906424)
chr1 (116-158)||(28417330-28417372)
chr1 (51-162)||(41677057-41677169)
chr1 (115-161)||(46670895-46670941)
chr1 (116-162)||(51917554-51917600)
chr1 (116-164)||(47645848-47645896)
chr1 (80-164)||(47763399-47763486)
chr1 (41-162)||(48260165-48260287)
[»] chr2 (17 HSPs)
chr2 (41-164)||(39334857-39334981)
chr2 (41-162)||(34107271-34107393)
chr2 (51-148)||(44132548-44132647)
chr2 (48-160)||(1244568-1244681)
chr2 (41-162)||(20942085-20942204)
chr2 (70-163)||(32288372-32288467)
chr2 (41-160)||(38581582-38581701)
chr2 (59-164)||(38807876-38807983)
chr2 (58-161)||(2057479-2057581)
chr2 (115-161)||(917342-917388)
chr2 (80-163)||(3179320-3179405)
chr2 (80-162)||(21970453-21970538)
chr2 (310-352)||(26545908-26545950)
chr2 (115-161)||(34376540-34376586)
chr2 (120-161)||(22014713-22014754)
chr2 (80-161)||(44187701-44187785)
chr2 (52-162)||(44487754-44487865)
[»] chr8 (13 HSPs)
chr8 (70-162)||(39432332-39432426)
chr8 (41-164)||(220338-220462)
chr8 (41-164)||(689493-689617)
chr8 (41-164)||(733961-734085)
chr8 (41-164)||(857857-857981)
chr8 (115-164)||(7345423-7345472)
chr8 (41-164)||(16808335-16808461)
chr8 (51-159)||(14011024-14011133)
chr8 (48-162)||(25470829-25470944)
chr8 (115-162)||(2696529-2696577)
chr8 (115-163)||(4955034-4955082)
chr8 (71-139)||(35779775-35779843)
chr8 (115-162)||(38790624-38790672)
[»] chr7 (16 HSPs)
chr7 (52-168)||(35498389-35498505)
chr7 (115-164)||(7465461-7465510)
chr7 (41-162)||(27726345-27726467)
chr7 (41-162)||(43635585-43635707)
chr7 (41-161)||(32814825-32814946)
chr7 (51-159)||(44409201-44409309)
chr7 (42-145)||(32309125-32309229)
chr7 (118-162)||(32514690-32514734)
chr7 (82-162)||(45267942-45268024)
chr7 (130-164)||(14772401-14772435)
chr7 (130-164)||(15222853-15222887)
chr7 (69-148)||(19924778-19924859)
chr7 (41-163)||(11808034-11808158)
chr7 (52-158)||(43712300-43712407)
chr7 (115-155)||(24427367-24427407)
chr7 (80-164)||(31475854-31475941)
[»] chr3 (14 HSPs)
chr3 (41-157)||(33533205-33533322)
chr3 (71-159)||(31108765-31108855)
chr3 (72-148)||(34407096-34407174)
chr3 (115-161)||(28951864-28951910)
chr3 (119-164)||(16985015-16985060)
chr3 (119-160)||(19149423-19149464)
chr3 (115-162)||(38555078-38555126)
chr3 (115-162)||(6951841-6951888)
chr3 (41-160)||(24160504-24160624)
chr3 (69-148)||(51017801-51017881)
chr3 (123-160)||(6284876-6284913)
chr3 (42-164)||(49299217-49299339)
chr3 (120-160)||(7020773-7020813)
chr3 (120-164)||(38507643-38507687)
[»] chr4 (17 HSPs)
chr4 (51-162)||(49039431-49039543)
chr4 (80-162)||(15640457-15640542)
chr4 (52-163)||(34684564-34684674)
chr4 (42-110)||(39293579-39293647)
chr4 (51-160)||(49319392-49319503)
chr4 (41-162)||(54854155-54854277)
chr4 (51-148)||(21023338-21023435)
chr4 (101-162)||(9062173-9062236)
chr4 (71-163)||(18740921-18741016)
chr4 (79-136)||(44272959-44273018)
chr4 (115-162)||(41492549-41492596)
chr4 (52-128)||(47416499-47416576)
chr4 (115-160)||(4419737-4419782)
chr4 (115-164)||(27921891-27921940)
chr4 (116-161)||(53335306-53335351)
chr4 (132-160)||(2942183-2942211)
chr4 (115-162)||(48968261-48968309)
[»] scaffold0119 (1 HSPs)
scaffold0119 (41-162)||(1036-1158)
[»] scaffold0045 (1 HSPs)
scaffold0045 (52-147)||(30885-30983)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 48 - 391
Target Start/End: Complemental strand, 24653256 - 24652904
Alignment:
Q  48 agtctagtggttagaattcgccttttttc-aatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaa 144  Q
    |||||| |||||||||||| | ||||||| |||||||||||| || || |||||  ||||||| ||||||  |||||||||||| |||||||| ||||||    
T  24653256 agtctaatggttagaattcactttttttctaatgtgaataagtggagtgtctgaaattcgaaccccaacccctgcatataataatgcatgtct-tgccaa 24653158  T
Q  145 ctgaattatgctcacgggaaaaaacaaacatacatacatgcaaataacttttannnnnnnacaaa--tgcatgcaaacaacacgtgtaagtctctaactc 242  Q
    |||| |||||||||||||| |||| |||||||||||||||||||||||||||          |||  |||||||||||||||||||||||||||||||||    
T  24653157 ctgagttatgctcacgggacaaaataaacatacatacatgcaaataactttttattttttttaaaattgcatgcaaacaacacgtgtaagtctctaactc 24653058  T
Q  243 ggagac-tttcctttcttttcattacaaaatgaatttggatcattggat----atattaannnnnnnnatgaagctaaattaacatacctaaattgacat 337  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||    |||||||        |||||||||||||| |||||||||||||||||    
T  24653057 ggagacctttccttttttttcattacaaaatgaatttggatcattggatatatatattaatttttgttatgaagctaaattagcatacctaaattgacat 24652958  T
Q  338 cgaagagaatcaaacccgatactttatactttaaagaggaacacattctcaaat 391  Q
    |||||||||||||||||||||||||||||| ||| |||||||||| || |||||    
T  24652957 cgaagagaatcaaacccgatactttatactctaaggaggaacacactcccaaat 24652904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 24652179 - 24652116
Alignment:
Q  390 atgttgttgatatgagttatctaatggcttcaaacagttgtctgtgtcatacttgatgtccatc 453  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  24652179 atgttgttgatatgagttatctaacggcttcaaacagttgtctgtgtcatacttgctctccatc 24652116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 3535922 - 3536034
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactcc--aacctgcatataataaggcatgtctctgccaactga 148  Q
    ||||||||||||||||  ||||||| || ||||||||| ||||| || | ||||||||| ||    |||| |||||| || ||||||| |||||||||||    
T  3535922 ctagtggttagaattc-actttttttaaggtgaataagtggggtgtccggggttcgaaccccggctcctgtatataacaatgcatgtccctgccaactga 3536020  T
Q  149 attatgctcacggg 162  Q
    | ||||||||||||    
T  3536021 actatgctcacggg 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 41181816 - 41181861
Alignment:
Q  42 tcaaggagtctagtggttagaattcgccttttttcaatgtgaataa 87  Q
    ||||| |||||||||||||||||||| |||||||||| ||||||||    
T  41181816 tcaagtagtctagtggttagaattcgtcttttttcaacgtgaataa 41181861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 6447494 - 6447581
Alignment:
Q  80 gtgaataagcggggtatctgaggttcgaactcc--aacctgcatataataaggca-tgtctctgccaactgaattatgctcacgggaa 164  Q
    ||||||||| ||||| || ||||||||||| ||    |||||||||||||| ||| |||| ||||||||||| |||||||||||||||    
T  6447494 gtgaataagtggggtgtccgaggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagttatgctcacgggaa 6447581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 8934900 - 8934797
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc-tgcatataataaggcatgtctct 139  Q
    |||||| |||||| |||||||||||  |||||||  || ||||||||| |||||||| | || |||||| || ||| |||||||||||| |||| |||||    
T  8934900 gtcaagtagtctaatggttagaatttaccttttta-aaggtgaataagtggggtatccggggctcgaaccccgaccatgcatataataatgcatttctct 8934802  T
Q  140 gccaa 144  Q
    |||||    
T  8934801 gccaa 8934797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 5932069 - 5932116
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||||| |||| || ||| |||||||||||||||||||||    
T  5932069 cctgcatataataatgcatatccctgtcaactgaattatgctcacggg 5932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 6291105 - 6291047
Alignment:
Q  50 tctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaac 109  Q
    ||||||||||||||||| ||||||| ||||||||||||  ||||| |||| |||||||||    
T  6291105 tctagtggttagaattcaccttttt-caatgtgaataaatggggtgtctggggttcgaac 6291047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 40250163 - 40250275
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactga 148  Q
    |||||| ||||||||| | ||||||||||| |||||||  |||| |  ||||||||||| || ||  |||||||||| || ||||||  |||||||||||    
T  40250163 ctagtgattagaattctc-ttttttcaatgagaataagtagggtgttcgaggttcgaaccccgactcctgcatataacaatgcatgttactgccaactga 40250261  T
Q  149 attatgctcacggg 162  Q
      ||||||||||||    
T  40250262 gctatgctcacggg 40250275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 11246477 - 11246591
Alignment:
Q  48 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaac 145  Q
    |||||||||| |||||||| ||||||| |||  |||||||| ||| | |||| |||| || | || |||  ||||||||| || ||||||| ||||||||    
T  11246477 agtctagtggctagaattcaccttttt-caagctgaataagtgggatgtctggggtttgagccccgacccctgcatataacaatgcatgtccctgccaac 11246575  T
Q  146 tgaattatgctcacgg 161  Q
    |||  |||||||||||    
T  11246576 tgagctatgctcacgg 11246591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 22687864 - 22687931
Alignment:
Q  48 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc 116  Q
    ||||||||||||||||||| || |||||||| ||||||||| ||||| |  | ||||| ||||||||||    
T  22687864 agtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgttcggggttcaaactccaacc 22687931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 36742018 - 36742066
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacggga 163  Q
    ||||||||||| ||  ||||||||||||||||||  |||||||||||||    
T  36742018 cctgcatataacaattcatgtctctgccaactgagctatgctcacggga 36742066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 22730688 - 22730809
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaa 149  Q
    |||||| |||||||| |||| ||| || ||||||||| ||||| || |||||||||||| ||   ||||||||||| || |||||||||||||||||||     
T  22730688 tagtggctagaattcaccttattttaaggtgaataagtggggtgtccgaggttcgaacttcagtccctgcatataacaatgcatgtctctgccaactgag 22730787  T
Q  150 ttatgctcacgggaaaaaacaa 171  Q
    ||||||||||||| | ||||||    
T  22730788 ttatgctcacggggacaaacaa 22730809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 9031886 - 9031763
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctc 138  Q
    |||||| ||||||||||||||||||| ||||||||  |  |||||||| ||||| |||||||||| |||| |||  ||||||||||| || ||||||| |    
T  9031886 gtcaagtagtctagtggttagaattcaccttttttttaaatgaataagtggggtgtctgaggttcaaacttcaagccctgcatataacaatgcatgtccc 9031787  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    ||||||||||  |||| |||||||    
T  9031786 tgccaactgagctatgttcacggg 9031763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 4844262 - 4844144
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| ||||||||||||||||||| | ||||||||| ||||||||| | ||| |||||||||  ||| || |||  ||||||||| || ||||||| |    
T  4844262 gtcaagtagtctagtggttagaattcac-ttttttcaaggtgaataagtgaggtgtctgaggtttaaaccccgacccctgcatataacaatgcatgtccc 4844164  T
Q  139 tgccaactgaattatgctca 158  Q
    |||||||||| |||| ||||    
T  4844163 tgccaactgagttatactca 4844144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 24257008 - 24256913
Alignment:
Q  69 cttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    |||||||||| ||||||||| |||||||| | |||||||||  |  ||  |||||||||||| |||||||||| |||||||| |||||||||||||    
T  24257008 cttttttcaaggtgaataagtggggtatccggggttcgaacctcggcccctgcatataataatgcatgtctctaccaactgacttatgctcacggg 24256913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 32540954 - 32541045
Alignment:
Q  69 cttttttcaatgtgaataagcggggtatctgaggttcgaactccaacctgcatata--ataaggcatgtctctgccaactgaattatgctca 158  Q
    ||||||| || ||||||||| ||||||||||  ||||||||||| ||||  |||||  |||| |||||||||||||||||||| ||||||||    
T  32540954 ctttttttaaggtgaataagtggggtatctggagttcgaactccgacctctatatataataatgcatgtctctgccaactgaactatgctca 32541045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 26669635 - 26669757
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| ||| |||||| |||||||| ||||||| ||| ||||||||| ||||| |||| ||||||||| ||| ||  | |||||||| | ||||||| |    
T  26669635 gtcaagtagtttagtggctagaattcaccttttt-caaggtgaataagtggggtgtctggggttcgaaccccagcccctacatataattatgcatgtccc 26669733  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    | ||||||||  ||||||||||||    
T  26669734 taccaactgagctatgctcacggg 26669757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 3030079 - 3029965
Alignment:
Q  48 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaac 145  Q
    |||| |||||||||||||| | |||||| || ||||||||| ||||| ||   |||||||||||||||  || ||||||||||   ||||| ||||||||    
T  3030079 agtccagtggttagaattcacatttttttaaggtgaataagtggggtgtccagggttcgaactccaaccactacatataataatttatgtccctgccaac 3029980  T
Q  146 tgaattatgctcacg 160  Q
    | | |||||||||||    
T  3029979 taagttatgctcacg 3029965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 30668235 - 30668281
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 161  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||    
T  30668235 cctgcatataataatgcatgtctatgccaactgagttatgctcacgg 30668281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 25064684 - 25064767
Alignment:
Q  81 tgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    |||| ||| ||||| |||| ||||||||| ||||||  |||||||||||| |||||||  | ||||||||| ||||||||||||    
T  25064684 tgaagaagtggggtgtctggggttcgaaccccaacccctgcatataataatgcatgtccataccaactgaactatgctcacggg 25064767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 30833107 - 30833018
Alignment:
Q  71 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctca 158  Q
    |||||||| | ||||||| ||||| || | ||||||||| || |||  ||||||||| || ||||||| |||||||||||| ||||||||    
T  30833107 tttttcaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgaactatgctca 30833018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 19136010 - 19135926
Alignment:
Q  80 gtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    ||||||||| | ||| | ||||||||||||  |||||  |||||||||||| ||||||| |||||||| ||  ||||||||||||    
T  19136010 gtgaataagtgtggtgtatgaggttcgaacgtcaacccatgcatataataatgcatgtccctgccaaccgagctatgctcacggg 19135926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 34571497 - 34571444
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggt 94  Q
    |||||| || |||||||||||||||| ||||||||||| | ||||||| |||||    
T  34571497 gtcaagtagactagtggttagaattccccttttttcaaagcgaataagtggggt 34571444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 41998205 - 41998095
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc-tgcatataataaggcatgtctctgccaactgaat 150  Q
    |||||| |||||||||||||||| ||||||||||||| ||||| |||| |||||||||||   || || ||||||||| |||||||||| |||||| | |    
T  41998205 tagtggctagaattcgccttttt-caatgtgaataagtggggtgtctgtggttcgaactcggcccttgtatataataatgcatgtctctaccaacttagt 41998107  T
Q  151 tatgctcacggg 162  Q
    ||||||||||||    
T  41998106 tatgctcacggg 41998095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 18179440 - 18179325
Alignment:
Q  48 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaac 145  Q
    |||||||||| |||||||| ||||||| ||| | |||||||| |||| |||| ||||||||||||    ||||||||||| || ||||||| ||||||||    
T  18179440 agtctagtggctagaattctccttttt-caaggagaataagcagggtgtctggggttcgaactccggtccctgcatataacaatgcatgtccctgccaac 18179342  T
Q  146 tgaattatgctcacggg 162  Q
    ||| |||||||||||||    
T  18179341 tgagttatgctcacggg 18179325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 9931206 - 9931084
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| |||||||| |||||||||| |||| ||| || ||||||||| ||||| | || ||||||||||||| |   |||||||||||| ||||||| |    
T  9931206 gtcaagtagtctagtagttagaattcaccttcttt-aaggtgaataagtggggtgtttggggttcgaactccagctcttgcatataataatgcatgtccc 9931108  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    ||| |||||| |||||||||||||    
T  9931107 tgctaactgagttatgctcacggg 9931084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 37262093 - 37262209
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacctgcatataataaggcatgtctctgccaactgaatt 151  Q
    |||||||||||||||  | ||||| || ||||||||| |||||||| | |||| ||||   | ||||||||||| || ||||||| |||||||||||| |    
T  37262093 tagtggttagaattcatcattttttaaggtgaataagtggggtatccggggtttgaacctgaccctgcatataacaacgcatgtccctgccaactgaact 37262192  T
Q  152 atgctcacgggaaaaaa 168  Q
    |||||||||| ||||||    
T  37262193 atgctcacggaaaaaaa 37262209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 2643798 - 2643913
Alignment:
Q  48 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaac 145  Q
    ||||||||||||||| ||| | |||||| || ||||||||| ||||| |||| ||||| ||| || |||  |||||||||||| ||||||||||||||||    
T  2643798 agtctagtggttagagttcacatttttt-aaggtgaataagtggggtgtctggggttcaaaccccgacccatgcatataataatgcatgtctctgccaac 2643896  T
Q  146 tgaattatgctcacggg 162  Q
    | |  ||||||||||||    
T  2643897 taagctatgctcacggg 2643913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 9769567 - 9769674
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaa 149  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||| || | ||||||||| ||||  ||| |||||||||| ||||||| |||||||||||     
T  9769567 tagtggttagaattcaccttttt-caaggtgaataagtggggtgtccggggttcgaaccccaatccctacatataataatgcatgtccctgccaactgag 9769665  T
Q  150 ttatgctca 158  Q
     ||||||||    
T  9769666 ctatgctca 9769674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 9410304 - 9410425
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaa-ctccaacctgcatataataaggcatgtctct 139  Q
    |||||| ||| |||| |||| ||||| ||||||| |||  |||||||| ||||| ||||||||||||| ||| | |||||||||||  | |||||||  |    
T  9410304 gtcaagtagtttagtagttaaaattcaccttttt-caagatgaataagtggggtgtctgaggttcgaatctcaaccctgcatataactatgcatgtcctt 9410402  T
Q  140 gccaactgaattatgctcacggg 162  Q
    |||||||||| ||||||||||||    
T  9410403 gccaactgaactatgctcacggg 9410425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 43020701 - 43020611
Alignment:
Q  71 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcac 159  Q
    |||||||| |||||| || ||||| || ||||||||||| ||||||  |||||||||||| ||||||| |||||||| ||  |||||||||    
T  43020701 tttttcaaggtgaatgagtggggtgtccgaggttcgaaccccaacccctgcatataataatgcatgtccctgccaaccgagctatgctcac 43020611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 9768814 - 9768907
Alignment:
Q  71 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    |||||||| ||||||||| ||||| || | ||||||||| || |||  ||||||||| || ||||||| |||||||||||  ||||||||||||    
T  9768814 tttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctatgctcacggg 9768907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 13941438 - 13941319
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaac-tccaacc-tgcatataataaggcatgtctc 138  Q
    |||||| ||| ||||||||||||||| | |||||||||  |||||||| ||||| || || |||||||| || |||| ||||||||| || |||||||      
T  13941438 gtcaagtagtttagtggttagaattcac-ttttttcaagatgaataagtggggtgtccgaagttcgaacctcgaaccctgcatataacaatgcatgtcct 13941340  T
Q  139 tgccaactgaattatgctcac 159  Q
    ||||||||||| ||| |||||    
T  13941339 tgccaactgaactatactcac 13941319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 195152 - 195055
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactcca--acctgcatataataaggcatgtctctgccaactga 148  Q
    ||||||||||||||| || |||||||| ||||||||| ||||| |||| ||| |||||  ||   |||||||||||| | ||||||| |||||||||||    
T  195152 tagtggttagaattcacc-tttttcaaggtgaataagtggggtgtctggggtacgaacctcagcccctgcatataattatgcatgtccctgccaactga 195055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 5684230 - 5684133
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 148  Q
    |||| |||| ||||| | |||||| || ||||||||| ||||| |||||||||| | | | ||||  |||||||||||| |||||||||||||||||||    
T  5684230 tagtagttaaaattcacttttttttaaagtgaataagtggggtgtctgaggttcaatc-ctaacccctgcatataataatgcatgtctctgccaactga 5684133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 8758404 - 8758463
Alignment:
Q  101 ggttcgaactccaac-ctgcatataataaggcatgtctctgccaactgaattatgctcac 159  Q
    ||||||||| ||||| || |||||||||| | |||||||| |||||||||||||||||||    
T  8758404 ggttcgaaccccaactctacatataataatgtatgtctctaccaactgaattatgctcac 8758463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 42908881 - 42908768
Alignment:
Q  50 tctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactg 147  Q
    ||||||||||||||||| ||||||| |||   ||||||| |||||||| |  |||||||| || |||  ||||||||| || ||||||| ||||||||||    
T  42908881 tctagtggttagaattctccttttt-caagaagaataagtggggtatccggagttcgaaccccgacccctgcatataacaatgcatgtccctgccaactg 42908783  T
Q  148 aattatgctcacggg 162  Q
    |  || |||||||||    
T  42908782 agctaagctcacggg 42908768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 7906312 - 7906424
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 148  Q
    ||||||| |||||||| | |||||| || || |||||||||||| ||   ||||||||| ||| ||  ||||||||| || ||||||| || ||||||||    
T  7906312 ctagtggctagaattcacatttttt-aaggtcaataagcggggtgtcccgggttcgaaccccagcccctgcatataacaatgcatgtccctaccaactga 7906410  T
Q  149 attatgctcacggg 162  Q
    | ||||||||||||    
T  7906411 actatgctcacggg 7906424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 28417330 - 28417372
Alignment:
Q  116 ctgcatataataaggcatgtctctgccaactgaattatgctca 158  Q
    |||||||||| || ||||||||||||||||||| |||||||||    
T  28417330 ctgcatataagaatgcatgtctctgccaactgagttatgctca 28417372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 41677169 - 41677057
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacct--gcatataataaggcatgtctctgccaactga 148  Q
    ||||||| |||||||| ||||||| ||| ||||||||| ||||| || |  |||||||| || |||   ||||||||||| | |||||||||||||||||    
T  41677169 ctagtggctagaattcaccttttt-caaggtgaataagtggggtgtccggagttcgaaccccgacccccgcatataataatgaatgtctctgccaactga 41677071  T
Q  149 attatgctcacggg 162  Q
      || |||||||||    
T  41677070 gctacgctcacggg 41677057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 46670895 - 46670941
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 161  Q
    ||||||||||| || ||||||| |||| |||||||||||||||||||    
T  46670895 cctgcatataacaatgcatgtcactgctaactgaattatgctcacgg 46670941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 51917554 - 51917600
Alignment:
Q  116 ctgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    ||||||||||||| |||||||| ||||||||||  ||||||||||||    
T  51917554 ctgcatataataatgcatgtctatgccaactgagctatgctcacggg 51917600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 47645848 - 47645896
Alignment:
Q  116 ctgcatataataaggcatgtctctgccaactgaattatgctcacgggaa 164  Q
    |||||||||| || |||||||||||||||||||  |||||||| |||||    
T  47645848 ctgcatataacaatgcatgtctctgccaactgagctatgctcatgggaa 47645896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 47763399 - 47763486
Alignment:
Q  80 gtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcat-gtctctgccaactgaattatgctcacgggaa 164  Q
    ||||||||| ||| | || ||||||||||||||  ||  |||||||||||| |||| ||| |||||||||||  ||||||||||||||    
T  47763399 gtgaataagtgggatgtccgaggttcgaactccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggaa 47763486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 48260165 - 48260287
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctc 138  Q
    ||||||||| ||| ||| |||||||| | ||||| ||| ||||||||| ||||| || | |||||||||||| |  ||  |||||||||| |||  || |    
T  48260165 gtcaaggagcctaatggctagaattcacattttt-caaggtgaataagtggggtgtccggggttcgaactccgaccccgacatataataatgcacatccc 48260263  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    ||||||||||  ||||||||||||    
T  48260264 tgccaactgagctatgctcacggg 48260287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 39334857 - 39334981
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| |||||||||| |||||||| ||||||| ||| ||||||||| ||| | ||||  |||||||| ||| ||  || ||||||||| ||||||| |    
T  39334857 gtcaagtagtctagtggctagaattcaccttttt-caaagtgaataagtgggatgtctggagttcgaaccccagcccctgtatataataatgcatgtccc 39334955  T
Q  139 tgccaactgaattatgctcacgggaa 164  Q
    |||||||||| |||||||||||||||    
T  39334956 tgccaactgagttatgctcacgggaa 39334981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 34107393 - 34107271
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| |||||||||| |||||||| | ||||| ||| ||||||||| ||||| ||||  ||||||||  |||||  |||||||||| |  |||||| |    
T  34107393 gtcaagtagtctagtggctagaattcacattttt-caaggtgaataagtggggtgtctggagttcgaacctcaacccctgcatataattatacatgtccc 34107295  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    ||||||||||  ||||||||||||    
T  34107294 tgccaactgagctatgctcacggg 34107271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 44132548 - 44132647
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacct--gcatataataaggcatgtctctgccaactga 148  Q
    ||||||||||| |||  |||||||||||  ||||||| |||||| ||||  |||||||| || ||||  |||||||| || |||||||||||||||||||    
T  44132548 ctagtggttagtatttaccttttttcaagatgaataaacggggtgtctggagttcgaaccccgacctctgcatataacaatgcatgtctctgccaactga 44132647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 1244681 - 1244568
Alignment:
Q  48 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaac 145  Q
    |||||||||| |||||||| ||||||| ||| ||||||||| ||||| || | ||||||||| || |||  ||||||||  || | ||||| ||||||||    
T  1244681 agtctagtggctagaattcaccttttt-caaggtgaataagtggggtgtccggggttcgaacccccacccctgcatatagcaatgtatgtccctgccaac 1244583  T
Q  146 tgaattatgctcacg 160  Q
    |||| ||||||||||    
T  1244582 tgaactatgctcacg 1244568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 20942085 - 20942204
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactcca--acctgcatataataaggcatgtctc 138  Q
    |||||| |||||||||  |||||||| | ||||||||| ||||||||| | ||| |||| |||||||||||||   ||| |||||||| | ||||||| |    
T  20942085 gtcaagtagtctagtgactagaattcac-ttttttcaaggtgaataagtgaggtgtctggggttcgaactccatcccctacatataattatgcatgtccc 20942183  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    |||||||||   ||||||||||||    
T  20942184 tgccaactg---tatgctcacggg 20942204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 32288467 - 32288372
Alignment:
Q  70 ttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaattatgctcacggga 163  Q
    ||||||||| ||||||||| ||||| || ||||||||||| || |  ||| |||||||||| |||||| |||| |||||||  || ||||||||||    
T  32288467 ttttttcaaggtgaataagtggggtgtccgaggttcgaaccccgatccctacatataataatgcatgtttctgtcaactgagctacgctcacggga 32288372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 38581582 - 38581701
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacct-gcatataataaggcatgtctct 139  Q
    |||||| || |||||||||||||| | |||||||| ||  |||||||| ||| | || ||||||||||   |||| | ||||||||||| | ||||||||    
T  38581582 gtcaagtagcctagtggttagaatacacctttttt-aagatgaataagtgggatgtccgaggttcgaatctcaacgttgcatataataatgtatgtctct 38581680  T
Q  140 gccaactgaattatgctcacg 160  Q
     |||||||| |||||||||||    
T  38581681 accaactgagttatgctcacg 38581701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 38807983 - 38807876
Alignment:
Q  59 tagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaattatgct 156  Q
    |||||||| | ||||||||| ||||||||| | ||| |||| ||||||||   ||   |||||||||||| | ||||||| ||||||||||| |||| ||    
T  38807983 tagaattcactttttttcaaggtgaataagtgcggtgtctggggttcgaatctcattccctgcatataattatgcatgtccctgccaactgagttatact 38807884  T
Q  157 cacgggaa 164  Q
    ||||||||    
T  38807883 cacgggaa 38807876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 2057581 - 2057479
Alignment:
Q  58 ttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacctgcatataataaggcatgtctctgccaactgaattatgctc 157  Q
    ||||||||| |||||||| || ||||||||| ||||| || | | ||||||||| | ||||||||||| || | || || |||||||||||  |||||||    
T  2057581 ttagaattcacctttttt-aaggtgaataagtggggtgtccgggattcgaactcgaccctgcatataacaatgtatatccctgccaactgagctatgctc 2057483  T
Q  158 acgg 161  Q
    ||||    
T  2057482 acgg 2057479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 917342 - 917388
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 161  Q
    |||||||||||||| |||||||||| |||||||| ||| ||||||||    
T  917342 cctgcatataataatgcatgtctctaccaactgagttaagctcacgg 917388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 3179405 - 3179320
Alignment:
Q  80 gtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaattatgctcacggga 163  Q
    ||||||||| ||||| ||||||||||||||  | |  |||||||||||||| ||||   ||| |||||||| ||||||||||||||    
T  3179405 gtgaataagtggggtgtctgaggttcgaacctcgacccctgcatataataatgcattgttctaccaactgagttatgctcacggga 3179320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 21970453 - 21970538
Alignment:
Q  80 gtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggca-tgtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||||||||| | ||||||||| || |  |||||||||||||| ||| |||| ||| |||||||  ||||||||||||    
T  21970453 gtgaataagcggggtatccggggttcgaaccccgatccctgcatataataatgcattgtccctgtcaactgagctatgctcacggg 21970538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 26545950 - 26545908
Alignment:
Q  310 agctaaattaacatacctaaattgacatcgaagagaatcaaac 352  Q
    ||||||||||||  ||||||||||| |||||||||||||||||    
T  26545950 agctaaattaacccacctaaattgatatcgaagagaatcaaac 26545908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 34376586 - 34376540
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 161  Q
    ||||||||||| || ||||||| |||||||||||||||| |||||||    
T  34376586 cctgcatataacaatgcatgtccctgccaactgaattatactcacgg 34376540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 22014713 - 22014754
Alignment:
Q  120 atataataaggcatgtctctgccaactgaattatgctcacgg 161  Q
    ||||||||| ||||||||||| |||||||| |||||||||||    
T  22014713 atataataatgcatgtctctgtcaactgaactatgctcacgg 22014754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 44187785 - 44187701
Alignment:
Q  80 gtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatg-tctctgccaactgaattatgctcacgg 161  Q
    ||||||||| ||||| |||| ||||||||| || |||  |||||||||||| ||||  || |||||||||||| |||||||||||    
T  44187785 gtgaataagtggggtgtctggggttcgaaccccgacccctgcatataataatgcattatccctgccaactgaactatgctcacgg 44187701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 44487754 - 44487865
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaa 149  Q
    ||||||||||||||| |||||||| || ||||||||| ||| | || | ||||||||||||  ||  |||||||||||| ||||||| ||  |||||||     
T  44487754 tagtggttagaattcacctttttt-aaggtgaataagtgggatgtccggggttcgaactccggcccttgcatataataatgcatgtccctatcaactgag 44487852  T
Q  150 ttatgctcacggg 162  Q
     ||| ||||||||    
T  44487853 ctatactcacggg 44487865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 39432332 - 39432426
Alignment:
Q  70 ttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    ||||||||| ||||||||| ||||| |||||||||||||| ||||  ||||||||||| |  ||||||| |||||||||||  ||||||||||||    
T  39432332 ttttttcaaagtgaataagtggggtgtctgaggttcgaaccccaacccctgcatataacattgcatgtccctgccaactgagctatgctcacggg 39432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 220338 - 220462
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 138  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||| || | | ||||||| |  ||  |||||||||| |  ||||||| |    
T  220338 gtcaagtagtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccc 220436  T
Q  139 tgccaactgaattatgctcacgggaa 164  Q
    ||||||||||  ||||||||||||||    
T  220437 tgccaactgagctatgctcacgggaa 220462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 689493 - 689617
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 138  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||| || | | ||||||| |  ||  |||||||||| |  ||||||| |    
T  689493 gtcaagtagtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccc 689591  T
Q  139 tgccaactgaattatgctcacgggaa 164  Q
    ||||||||||  ||||||||||||||    
T  689592 tgccaactgagctatgctcacgggaa 689617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 733961 - 734085
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 138  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||| || | | ||||||| |  ||  |||||||||| |  ||||||| |    
T  733961 gtcaagtagtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccc 734059  T
Q  139 tgccaactgaattatgctcacgggaa 164  Q
    ||||||||||  ||||||||||||||    
T  734060 tgccaactgagctatgctcacgggaa 734085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 857857 - 857981
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 138  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||| || | | ||||||| |  ||  |||||||||| |  ||||||| |    
T  857857 gtcaagtagtctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccc 857955  T
Q  139 tgccaactgaattatgctcacgggaa 164  Q
    ||||||||||  ||||||||||||||    
T  857956 tgccaactgagctatgctcacgggaa 857981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 7345472 - 7345423
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacgggaa 164  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  7345472 cctgcatataataatgcatgtccctgccaactgagttatgctcacgggaa 7345423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 16808335 - 16808461
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa---cctgcatataataaggcatgtct 137  Q
    |||||| || |||||||||||||||| | |||||| || ||||||||| ||| | | || ||||||||| ||     |||||||||||||| |||||||     
T  16808335 gtcaagcagcctagtggttagaattcacttttttttaaggtgaataagtgggctgtatggggttcgaaccccccacccctgcatataataatgcatgtcc 16808434  T
Q  138 ctgccaactgaattatgctcacgggaa 164  Q
    |||| |||||| ||||||||| |||||    
T  16808435 ctgctaactgagttatgctcatgggaa 16808461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 14011024 - 14011133
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 148  Q
    |||||||||||||||| | |||||| ||  |||||||| ||| | || ||||||||||||||  ||  ||||||||| || ||||||| |||||||||||    
T  14011024 ctagtggttagaattcacatttttt-aagatgaataagtgggatgtccgaggttcgaactccggcccctgcatataacaatgcatgtccctgccaactga 14011122  T
Q  149 attatgctcac 159  Q
    | |||||||||    
T  14011123 actatgctcac 14011133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 25470829 - 25470944
Alignment:
Q  48 agtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaac 145  Q
    |||||||||| |||||||| |||| || ||| ||||||||  ||||| || ||||||||||| || |||  || ||||||||| ||||||  ||| ||||    
T  25470829 agtctagtggctagaattcaccttctt-caaggtgaataaatggggtgtccgaggttcgaaccccgacccatgaatataataatgcatgttcctgtcaac 25470927  T
Q  146 tgaattatgctcacggg 162  Q
    ||| |||||||||||||    
T  25470928 tgagttatgctcacggg 25470944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 2696577 - 2696529
Alignment:
Q  115 cctgcatataataaggcat-gtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||||| |||| ||| ||||||||||| |||||||||||||    
T  2696577 cctgcatataataatgcattgtccctgccaactgagttatgctcacggg 2696529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 4955034 - 4955082
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacggga 163  Q
    ||||||||||| ||  |||||||||||||| ||| ||||||||||||||    
T  4955034 cctgcatataacaatacatgtctctgccaattgagttatgctcacggga 4955082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 35779843 - 35779775
Alignment:
Q  71 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacctgcatataataaggcatgtctct 139  Q
    ||||||||  |||||||| ||||| ||  |||||||||| || |||||||||||| || ||||||||||    
T  35779843 tttttcaagatgaataagtggggtgtcctaggttcgaaccccgacctgcatataacaatgcatgtctct 35779775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 38790624 - 38790672
Alignment:
Q  115 cctgcatataataaggcat-gtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||||| |||| ||| ||||||||||| |||||||||||||    
T  38790624 cctgcatataataatgcattgtccctgccaactgagttatgctcacggg 38790672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 35498505 - 35498389
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaa 149  Q
    |||||| |||||||| ||||||| ||| ||||||||| ||||| || || ||| |||| ||||||  |||||||||||| ||||||| |||||||||||     
T  35498505 tagtggctagaattcaccttttt-caaagtgaataagtggggtgtccgaagtttgaac-ccaacccctgcatataataatgcatgtccctgccaactgag 35498408  T
Q  150 ttatgctcacgggaaaaaa 168  Q
    ||||||| |||||| ||||    
T  35498407 ttatgcttacgggacaaaa 35498389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 7465510 - 7465461
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacgggaa 164  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  7465510 cctgcatataataatgcatgtctctgccaactgagctatgctcacgggaa 7465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 27726345 - 27726467
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctc 138  Q
    |||||| ||||||||||||||||||| || |||| ||| | |||||||| |||| || ||||||||||| ||  |  |||| |||||||| ||||||| |    
T  27726345 gtcaagtagtctagtggttagaattcacc-ttttccaaagcgaataagcagggtgtccgaggttcgaaccccggccactgcttataataatgcatgtccc 27726443  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    ||||||||||  |||| |||||||    
T  27726444 tgccaactgagctatgttcacggg 27726467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 43635707 - 43635585
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| ||| |||||| |||||||| || ||| | || ||||||||| ||||| || | ||||||||| || |||  ||||||||| || |||||| ||    
T  43635707 gtcaagtagtttagtggctagaattcaccctttgt-aaggtgaataagtggggtgtccggggttcgaaccccgaccgctgcatataacaatgcatgtttc 43635609  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    |||||||||| |||||||||||||    
T  43635608 tgccaactgagttatgctcacggg 43635585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 32814946 - 32814825
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| |||| |||||||| ||||| |||||||| | | |||||||| ||||| || | | |||||||||| |||  |||||||||||| ||||||| |    
T  32814946 gtcaagtagtccagtggttaaaattcaccttttttta-tatgaataagtggggtgtccgggattcgaactccgacccctgcatataataatgcatgtccc 32814848  T
Q  139 tgccaactgaattatgctcacgg 161  Q
    | ||||||||  |||||||||||    
T  32814847 taccaactgagctatgctcacgg 32814825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 44409309 - 44409201
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 148  Q
    |||||||||||||||| ||||||| ||| ||||||||| ||||| |  | ||||||||| || |||  |||||||||||| ||||||| |||| ||||||    
T  44409309 ctagtggttagaattcaccttttt-caaggtgaataagtggggtgttcg-ggttcgaaccccgacccttgcatataataatgcatgtccctgctaactga 44409212  T
Q  149 attatgctcac 159  Q
     ||||||||||    
T  44409211 gttatgctcac 44409201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 32309125 - 32309229
Alignment:
Q  42 tcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctct 139  Q
    ||||| |||||||||| |||||||| | |||||| || ||||||||  ||||| |||||| |||||||||| |||  ||||||||| || ||||||| ||    
T  32309125 tcaagtagtctagtggctagaattcacatttttt-aaggtgaataactggggtgtctgagattcgaactccgacccctgcatataacaatgcatgtccct 32309223  T
Q  140 gccaac 145  Q
    ||||||    
T  32309224 gccaac 32309229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 32514690 - 32514734
Alignment:
Q  118 gcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||    
T  32514690 gcatataataatacatgtctctgccaactgaactatgctcacggg 32514734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 45267942 - 45268024
Alignment:
Q  82 gaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    ||||||| ||||| |||  |||||||||||| ||  |||||||||||||   |||||||||||||||||  ||||||||||||    
T  45267942 gaataagtggggtgtctatggttcgaactccgactcctgcatataataatatatgtctctgccaactgagctatgctcacggg 45268024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 14772401 - 14772435
Alignment:
Q  130 gcatgtctctgccaactgaattatgctcacgggaa 164  Q
    ||||||||||||||||||| |||||||||||||||    
T  14772401 gcatgtctctgccaactgagttatgctcacgggaa 14772435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 15222853 - 15222887
Alignment:
Q  130 gcatgtctctgccaactgaattatgctcacgggaa 164  Q
    ||||||||||||||||||| |||||||||||||||    
T  15222853 gcatgtctctgccaactgagttatgctcacgggaa 15222887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 19924859 - 19924778
Alignment:
Q  69 cttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactga 148  Q
    ||||||| || ||||||||| ||||||| || | |||||||||  ||  ||||||||||||| ||||||| |||||||||||    
T  19924859 ctttttttaaggtgaataagtggggtatatgggattcgaactctcacttctgcatataataatgcatgtccctgccaactga 19924778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 11808158 - 11808034
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| |||||||| |||||||||| | |||||  || ||||||||| ||||| || | ||||||||| || |||  ||||||||| || ||||||| |    
T  11808158 gtcaagtagtctagttgttagaattcacgtttttctaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccc 11808059  T
Q  139 tgccaactgaattatgctcacggga 163  Q
    | |||| |||  || ||||||||||    
T  11808058 taccaattgagctaagctcacggga 11808034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 43712300 - 43712407
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactgaa 149  Q
    |||||| |||||||| ||||||| ||| | | ||||| |||||||| ||||||||||| || |  |||| |||||| || ||||||| || ||||||||     
T  43712300 tagtggctagaattctccttttt-caaggaggataagtggggtatccgaggttcgaaccccgacccctgtatataacaatgcatgtccctaccaactgag 43712398  T
Q  150 ttatgctca 158  Q
    |||||||||    
T  43712399 ttatgctca 43712407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 24427407 - 24427367
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgc 155  Q
    ||||||||||| || ||||||||||||||||||| ||||||    
T  24427407 cctgcatataacaatgcatgtctctgccaactgagttatgc 24427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 31475854 - 31475941
Alignment:
Q  80 gtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggca-tgtctctgccaactgaattatgctcacgggaa 164  Q
    ||||||||| ||||| || | ||||||||| ||| ||  |||||||||||| ||| |||| |||||||||||  ||||||||||||||    
T  31475854 gtgaataagtggggtgtcaggggttcgaaccccagcccctgcatataataatgcaatgtccctgccaactgagctatgctcacgggaa 31475941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 33533322 - 33533205
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| |||||||| |||||||||| | |||||| || ||||||||| ||| | |||  ||||||||| ||||||  | ||||||| || |||||||||    
T  33533322 gtcaagtagtctagttgttagaattcacttttttt-aaggtgaataagtgggatgtctatggttcgaaccccaaccactacatataacaatgcatgtctc 33533224  T
Q  139 tgccaactgaattatgctc 157  Q
    |||||||||| ||||||||    
T  33533223 tgccaactgagttatgctc 33533205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 31108765 - 31108855
Alignment:
Q  71 tttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcac 159  Q
    |||||||| ||||||||| ||||| |||  ||||||||| ||| ||  |||||||||| | ||||||| ||||||||||| ||||||||||    
T  31108765 tttttcaaggtgaataagtggggtgtctcgggttcgaaccccagcccctgcatataattatgcatgtccctgccaactgagttatgctcac 31108855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 34407096 - 34407174
Alignment:
Q  72 ttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 148  Q
    |||||||  |||||||| ||||| |||| ||||||||| ||||||  |||||||||||| ||||||| |||||||||||    
T  34407096 ttttcaagatgaataagtggggtgtctggggttcgaaccccaacccctgcatataataatgcatgtccctgccaactga 34407174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 28951910 - 28951864
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacgg 161  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||    
T  28951910 cctgcatataataatgcatgtatctgccaactgagttatgctcacgg 28951864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 16985060 - 16985015
Alignment:
Q  119 catataataaggcatgtctctgccaactgaattatgctcacgggaa 164  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||    
T  16985060 catataataatgaatgtctctgccaactgaattatgttcacgggaa 16985015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 19149464 - 19149423
Alignment:
Q  119 catataataaggcatgtctctgccaactgaattatgctcacg 160  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  19149464 catataataatgcatgtctctgtcaactgaattatgctcacg 19149423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 38555078 - 38555126
Alignment:
Q  115 cctgcatataataaggcat-gtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  38555078 cctgcatataataatgcattgtctctgccaactgaactatgctcacggg 38555126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 6951841 - 6951888
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||||||||    
T  6951841 cctgcatataataatgcatgtccctgtcaactgagttatgctcacggg 6951888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 24160504 - 24160624
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| ||||| |||| ||||||||  ||||||  || ||||||||| || || || | ||||||||| || |||  ||||||||| |  |||||||||    
T  24160504 gtcaagtagtctggtggctagaattcaactttttgaaa-gtgaataagtggagtgtccggggttcgaaccccgacccctgcatataacagtgcatgtctc 24160602  T
Q  139 tgccaactgaattatgctcacg 160  Q
    |||||||||| |||||||||||    
T  24160603 tgccaactgagttatgctcacg 24160624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 51017881 - 51017801
Alignment:
Q  69 cttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactga 148  Q
    |||||||||| ||||||||| ||||| || | |||||||||||| ||  |||||||||| || ||||||| |||||||||||    
T  51017881 cttttttcaaagtgaataagtggggtgtccg-ggttcgaactccgactcctgcatataacaatgcatgtccctgccaactga 51017801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 6284913 - 6284876
Alignment:
Q  123 taataaggcatgtctctgccaactgaattatgctcacg 160  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  6284913 taataatgcatgtccctgccaactgaattatgctcacg 6284876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 49299217 - 49299339
Alignment:
Q  42 tcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacctg--catataataaggcatgtctct 139  Q
    ||||| |||||||||| ||||||||  |||| | ||| ||||||||| || || |||| ||||||||| ||| |||   |||||||| | ||||||| ||    
T  49299217 tcaagtagtctagtggctagaattcagctttct-caaggtgaataagtggagtgtctg-ggttcgaaccccagcctttacatataattatgcatgtccct 49299314  T
Q  140 gccaactgaattatgctcacgggaa 164  Q
    | |||||||| ||||||||||||||    
T  49299315 gtcaactgaactatgctcacgggaa 49299339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 7020813 - 7020773
Alignment:
Q  120 atataataaggcatgtctctgccaactgaattatgctcacg 160  Q
    ||||||||| |||||||||||||||||||  ||||||||||    
T  7020813 atataataatgcatgtctctgccaactgatctatgctcacg 7020773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 38507687 - 38507643
Alignment:
Q  120 atataataaggcatgtctctgccaactgaattatgctcacgggaa 164  Q
    ||||||||| ||||||| |||||||||||  ||||||||||||||    
T  38507687 atataataatgcatgtccctgccaactgagctatgctcacgggaa 38507643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 49039431 - 49039543
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtctctgccaactga 148  Q
    ||||||| |||||||| ||||||| ||| ||||||||| ||||| || | ||||||||| |||   ||||||||||| || ||||||| |||||||||||    
T  49039431 ctagtggctagaattcaccttttt-caaggtgaataagtggggtgtccggggttcgaaccccagtccctgcatataacaatgcatgtccctgccaactga 49039529  T
Q  149 attatgctcacggg 162  Q
      ||||||||||||    
T  49039530 gctatgctcacggg 49039543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 15640457 - 15640542
Alignment:
Q  80 gtgaataagcggggtatctgaggttcgaactcc-aac-ctgcatataataaggca-tgtctctgccaactgaattatgctcacggg 162  Q
    ||||||||| ||||| |||||||||||||| || ||| ||||||||||||| ||| ||||||||||||||||  ||||||||||||    
T  15640457 gtgaataagtggggtgtctgaggttcgaaccccgaacactgcatataataatgcattgtctctgccaactgagatatgctcacggg 15640542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 34684674 - 34684564
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaac--ctgcatataataaggcatgtctctgccaactgaa 149  Q
    ||||||||||||||| |||| |   || ||||||||| ||||| ||||||||||||| ||||||  ||||||||||||| | ||  | || |||| ||||    
T  34684674 tagtggttagaattcaccttat---aaggtgaataagtggggtgtctgaggttcgaattccaacctctgcatataataatgtattcccctaccaattgaa 34684578  T
Q  150 ttatgctcacggga 163  Q
    ||||||||||||||    
T  34684577 ttatgctcacggga 34684564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 39293647 - 39293579
Alignment:
Q  42 tcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaact 110  Q
    ||||| |||||||| | |||||||| ||||||||||| ||||||||| ||| | |||||||||||||||    
T  39293647 tcaagtagtctagtagctagaattcaccttttttcaaggtgaataagtgggatgtctgaggttcgaact 39293579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 49319503 - 49319392
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactga 148  Q
    ||||||| || ||||| ||||||||||| ||||||||| ||||| || | |||| |||| || |||  |||||||||||| |||||||  ||||||||||    
T  49319503 ctagtggctataattcaccttttttcaaggtgaataagtggggtgtccggggttggaaccccgacccctgcatataataatgcatgtccatgccaactga 49319404  T
Q  149 attatgctcacg 160  Q
      ||||||||||    
T  49319403 gctatgctcacg 49319392  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 54854155 - 54854277
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| |||||||||| |||||||| | ||||||||| ||||||||| | | | || | ||||||||| ||| ||  |||||||||| | ||||||| |    
T  54854155 gtcaagtagtctagtggctagaattcac-ttttttcaaggtgaataagtgtgatgtccggggttcgaaccccagcccctgcatataattatgcatgtccc 54854253  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    ||||||||||  ||||||||||||    
T  54854254 tgccaactgagctatgctcacggg 54854277  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 21023338 - 21023435
Alignment:
Q  51 ctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa-cctgcatataataaggcatgtctctgccaactga 148  Q
    |||||||||||||||| || |||||||| ||||||||| ||||| || | ||||||||| |||| || | |||||| || |||||| ||||||||||||    
T  21023338 ctagtggttagaattcacc-tttttcaaggtgaataagtggggtgtcgggggttcgaaccccaaccccggatataacaatgcatgtttctgccaactga 21023435  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 9062236 - 9062173
Alignment:
Q  101 ggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    ||||||||| ||||||  |||||||||||| ||||||| ||||||||| || ||||||||||||    
T  9062236 ggttcgaaccccaacccttgcatataataatgcatgtccctgccaactaaactatgctcacggg 9062173  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 18740921 - 18741016
Alignment:
Q  71 tttttcaatgtgaataagcgggg-tatctgaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactgaattatgctcacggga 163  Q
    |||||||| ||||||||| |||| | | || |||||||||||| |||  |||||||||||| |||| |||||||||||||| || |||| ||||||    
T  18740921 tttttcaaggtgaataagtgggggtgtttggggttcgaactccgacccctgcatataataatgcatatctctgccaactgagttgtgcttacggga 18741016  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 44273018 - 44272959
Alignment:
Q  79 tgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataaggcatgtc 136  Q
    |||||||||| |||||||| |||||||||||||| |  |||||||||||||| |||||||    
T  44273018 tgtgaataagtggggtatccgaggttcgaactccgacccctgcatataataatgcatgtc 44272959  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 41492549 - 41492596
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||||| ||||||| |||||||||||  ||||||||||||    
T  41492549 cctgcatataataatgcatgtccctgccaactgagctatgctcacggg 41492596  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 47416576 - 47416499
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaa--cctgcatataataa 128  Q
    ||||||||||||||| || |||||||| ||||||||| ||||| || ||| ||||||| ||||  ||||||||||||||    
T  47416576 tagtggttagaattcacc-tttttcaaagtgaataagtggggtgtccgagattcgaaccccaacccctgcatataataa 47416499  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 4419737 - 4419782
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacg 160  Q
    ||||||||||| || ||||||||||| ||||||| |||||||||||    
T  4419737 cctgcatataacaatgcatgtctctgacaactgagttatgctcacg 4419782  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 27921940 - 27921891
Alignment:
Q  115 cctgcatataataaggcatgtctctgccaactgaattatgctcacgggaa 164  Q
    |||||||||||||| ||||||| || ||||||||  ||||||||||||||    
T  27921940 cctgcatataataatgcatgtccctaccaactgagctatgctcacgggaa 27921891  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 53335351 - 53335306
Alignment:
Q  116 ctgcatataataaggcatgtctctgccaactgaattatgctcacgg 161  Q
    ||||||||||  | ||||||| ||||||||||||||||||||||||    
T  53335351 ctgcatataacgatgcatgtcgctgccaactgaattatgctcacgg 53335306  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 2942211 - 2942183
Alignment:
Q  132 atgtctctgccaactgaattatgctcacg 160  Q
    |||||||||||||||||||||||||||||    
T  2942211 atgtctctgccaactgaattatgctcacg 2942183  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 48968261 - 48968309
Alignment:
Q  115 cctgcatataataaggcat-gtctctgccaactgaattatgctcacggg 162  Q
    |||||||||||||| |||| ||| |||||||||||| ||||||||||||    
T  48968261 cctgcatataataatgcattgtccctgccaactgaactatgctcacggg 48968309  T

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Target: scaffold0119 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 1158 - 1036
Alignment:
Q  41 gtcaaggagtctagtggttagaattcgccttttttcaatgtgaataagcggggtatctgaggttcgaactccaacc--tgcatataataaggcatgtctc 138  Q
    |||||| ||| |||||| |||||||| ||||||| ||| ||||||||| ||||| |||| ||||||||| ||| ||  | |||||||| | ||||||| |    
T  1158 gtcaagtagtttagtggctagaattcaccttttt-caaggtgaataagtggggtgtctggggttcgaaccccagcccctacatataattatgcatgtccc 1060  T
Q  139 tgccaactgaattatgctcacggg 162  Q
    | ||||||||  ||||||||||||    
T  1059 taccaactgagctatgctcacggg 1036  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 30885 - 30983
Alignment:
Q  52 tagtggttagaattcgccttttttcaatgtgaataagcggggtatct-gaggttcgaactccaacc--tgcatataataaggcatgtctctgccaactg 147  Q
    ||||| ||||||||| |||||||| || ||||||||| | ||| ||| | ||||||||||||||||  |||||||||||  ||||||| ||||||||||    
T  30885 tagtgattagaattcacctttttttaaagtgaataagtgaggtgtctagtggttcgaactccaacccctgcatataatactgcatgtccctgccaactg 30983  T

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