View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8325_low_1 (Length: 534)
Name: NF8325_low_1
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8325_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Original strand, 51933462 - 51933961
Alignment:
| Q |
19 |
atataggaccagcagagacaatctcttcagttaacttttgatctttccctatcttgtagctcacaaatccatcaaaattgttcttgaatagaccagctaa |
118 |
Q |
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| T |
51933462 |
atataggaccagcagagacaatctcttcagttaacttttgatctttccctatcttgtagctcacaaatccatcaaaattgttcttgaatagaccagctaa |
51933561 |
T |
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| Q |
119 |
tttcagaagtgtatcttggtaggccttcttttcaaaccactgcagttcatgcaagtacagttcataccttcaagattgtgatatagttgtataaaactta |
218 |
Q |
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| T |
51933562 |
tttcagaagtgtatcttggtaggccttcttttcaaaccactgcagttcatgcaagtacagttcataccttcaagattgtgatatagttgtataaaactta |
51933661 |
T |
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| Q |
219 |
tatactgaatattaagtattaactaaccgtgtttatggggtccaagatttcagatgggactccatctattgctgttgggatctcaagcccaaacacttca |
318 |
Q |
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| T |
51933662 |
tatactgaatattaagtattaactaaccgtgtttatggggtccaagatttcagatgggactccatctattgctgttgggatctcaagcccaaacacttca |
51933761 |
T |
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| Q |
319 |
gttttaatgtatttcgcattcaagagactgccagaatgaatggcatcaatgattttcctcgtgtacgctaacttgatccgattgcctgatccataactgc |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933762 |
gttttaatgtatttcgcattcaagagacagccagaatgaatggcatcaatgattttcctcgtgtacgctaacttgatccgattgcctgatccataactgc |
51933861 |
T |
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| Q |
419 |
caaattacagggaagaaaaattagttttagtgaggaaaaaactaccatatatgcagttgcattgttagagttcacaccttccccctgaccagccagtatt |
518 |
Q |
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| T |
51933862 |
caaattacagggaagaaaaattagttttagtgaggaaaaaactaccatatatgcagttgcattgttagagttcacaccttccccctgaccagccagtatt |
51933961 |
T |
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