View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8325_low_10 (Length: 282)

Name: NF8325_low_10
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8325_low_10
NF8325_low_10
[»] chr6 (3 HSPs)
chr6 (25-263)||(10495310-10495542)
chr6 (42-87)||(13657730-13657775)
chr6 (59-87)||(13239670-13239698)
[»] chr1 (1 HSPs)
chr1 (1-89)||(12011037-12011126)
[»] chr7 (4 HSPs)
chr7 (1-87)||(8612671-8612757)
chr7 (1-75)||(11070016-11070090)
chr7 (1-74)||(7324303-7324376)
chr7 (42-83)||(26652035-26652076)
[»] chr3 (3 HSPs)
chr3 (2-87)||(25374327-25374412)
chr3 (46-87)||(11059391-11059432)
chr3 (1-73)||(10291097-10291169)
[»] chr2 (2 HSPs)
chr2 (42-81)||(29845276-29845315)
chr2 (42-74)||(20062058-20062090)
[»] chr8 (4 HSPs)
chr8 (49-89)||(13566980-13567021)
chr8 (42-87)||(19974476-19974521)
chr8 (42-87)||(21018312-21018357)
chr8 (38-83)||(27859639-27859684)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 10495542 - 10495310
Alignment:
Q  25 aaccacgactcctatcttctaccgcctactctatatatattattaaaaaagagaaaatatatacaggagaaccaggccaatatcctnnnnnnnncattcg 124  Q
    |||| ||||||||||| |||||||||||||| ||||||||      |||| |||||||||||| ||||| || ||||||||| | |        |||| |    
T  10495542 aaccgcgactcctatcctctaccgcctactccatatatat------aaaatagaaaatatatataggaggactaggccaataccttaaaaaaaacattag 10495449  T
Q  125 ctatgaccaaatatactgttcatttccagggaatcaatctatcaacgtatctcagttgatttctgacaaaccaaatgacattaattatgtttacaagagc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10495448 ctatgaccaaatatactgttcatttccagggaatcaatctatcaaagtatctcagttgatttctcacaaaccaaatgacattaattatgtttacaagagc 10495349  T
Q  225 aaattgcatgacttttttgcattgagaaaaccaacctct 263  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  10495348 aaattgcatgactattttgcattgagaaaaccaacctct 10495310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 13657775 - 13657730
Alignment:
Q  42 tctaccgcctactctatatatattattaaaaaagagaaaatatata 87  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||    
T  13657775 tctagcgcctactcaatatatattattaaaaaagggaaaatatata 13657730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 13239698 - 13239670
Alignment:
Q  59 atatattattaaaaaagagaaaatatata 87  Q
    |||||||||||||||||||||||||||||    
T  13239698 atatattattaaaaaagagaaaatatata 13239670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12011126 - 12011037
Alignment:
Q  1 aacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaagag-aaaatatataca 89  Q
    ||||| ||||||| ||||| | ||||||  |||||| ||| |||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  12011126 aacatgccaactaggttggcatccaaccgggactcccatcctctaccgcctactccatatatattattaaaaaagggaaaaatatataca 12011037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8612671 - 8612757
Alignment:
Q  1 aacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaagagaaaatatata 87  Q
    ||||||||||||| ||||  ||||||||    |||||||| |||||||| ||||| ||||||||||||||||||| ||||| |||||    
T  8612671 aacatcccaactaggttgacacccaaccgaagctcctatcctctaccgcttactccatatatattattaaaaaagggaaaaaatata 8612757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11070090 - 11070016
Alignment:
Q  1 aacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaag 75  Q
    ||||||||||||| ||||| | |||||    ||||  ||||||||||| |||||| |||||||||||||||||||    
T  11070090 aacatcccaactaggttggcatccaactgaaactctcatcttctaccgtctactccatatatattattaaaaaag 11070016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7324376 - 7324303
Alignment:
Q  1 aacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaa 74  Q
    ||||||||||||| ||||| | ||||| |   |||| ||| |||||||||||||| ||||||||||||| ||||    
T  7324376 aacatcccaactaggttggcatccaactagagctcccatcctctaccgcctactccatatatattattataaaa 7324303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 26652076 - 26652035
Alignment:
Q  42 tctaccgcctactctatatatattattaaaaaagagaaaata 83  Q
    |||||| |||| |||||||||||||| |||||||||||||||    
T  26652076 tctaccacctattctatatatattatcaaaaaagagaaaata 26652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 25374327 - 25374412
Alignment:
Q  2 acatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaagagaaaatatata 87  Q
    ||||||||||||  |||| |||| |||| |||||| ||| | | ||||| |||| ||||||||||||||||||||  |||||||||    
T  25374327 acatcccaactagattggcaccccaccaggactccaatcctatgccgccaactccatatatattattaaaaaagaagaaatatata 25374412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 11059391 - 11059432
Alignment:
Q  46 ccgcctactctatatatattattaaaaaagagaaaatatata 87  Q
    |||||||||| |||||||||||||||||||  ||||||||||    
T  11059391 ccgcctactccatatatattattaaaaaaggaaaaatatata 11059432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10291169 - 10291097
Alignment:
Q  1 aacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaa 73  Q
    |||||| |||||| ||||| ||||||||   ||||  ||| |||||| ||||||| |||||||||||||||||    
T  10291169 aacatctcaactaggttggcacccaaccggaactctcatcctctaccacctactccatatatattattaaaaa 10291097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 29845315 - 29845276
Alignment:
Q  42 tctaccgcctactctatatatattattaaaaaagagaaaa 81  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  29845315 tctaccacctactcaatatatattattaaaaaagagaaaa 29845276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 20062058 - 20062090
Alignment:
Q  42 tctaccgcctactctatatatattattaaaaaa 74  Q
    |||||||||||||| ||||||||||||||||||    
T  20062058 tctaccgcctactcaatatatattattaaaaaa 20062090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 13566980 - 13567021
Alignment:
Q  49 cctactctatatatattattaaaaaagag-aaaatatataca 89  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  13566980 cctactctatatatattatttaaaaagagaaaaatatataca 13567021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 19974476 - 19974521
Alignment:
Q  42 tctaccgcctactctatatatattattaaaaaagagaaaatatata 87  Q
    |||||| ||||||  |||||||||||||||||||| ||||||||||    
T  19974476 tctacctcctactacatatatattattaaaaaagaaaaaatatata 19974521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 21018357 - 21018312
Alignment:
Q  42 tctaccgcctactctatatatattattaaaaaagagaaaatatata 87  Q
    |||||| ||||||  |||||||||||||||||||| ||||||||||    
T  21018357 tctacctcctactacatatatattattaaaaaagaaaaaatatata 21018312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 27859639 - 27859684
Alignment:
Q  38 atcttctaccgcctactctatatatattattaaaaaagagaaaata 83  Q
    ||||||||||||||| || ||||||||||||||||||  |||||||    
T  27859639 atcttctaccgcctattccatatatattattaaaaaaaggaaaata 27859684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University