View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8325_low_12 (Length: 262)

Name: NF8325_low_12
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8325_low_12
NF8325_low_12
[»] chr3 (18 HSPs)
chr3 (62-151)||(51673048-51673137)
chr3 (156-238)||(50989203-50989285)
chr3 (156-238)||(51092335-51092417)
chr3 (159-235)||(38247801-38247877)
chr3 (156-239)||(9271110-9271193)
chr3 (157-238)||(12224103-12224184)
chr3 (153-238)||(8496703-8496788)
chr3 (155-238)||(48034909-48034992)
chr3 (157-238)||(23004757-23004838)
chr3 (160-237)||(33288136-33288213)
chr3 (156-238)||(8330692-8330774)
chr3 (156-207)||(29915090-29915141)
chr3 (156-207)||(29964243-29964294)
chr3 (162-233)||(39947262-39947333)
chr3 (164-228)||(54713532-54713596)
chr3 (158-233)||(36674624-36674699)
chr3 (15-45)||(51672826-51672856)
chr3 (160-228)||(46135531-46135599)
[»] chr2 (17 HSPs)
chr2 (159-238)||(36272761-36272840)
chr2 (157-235)||(13697068-13697146)
chr2 (156-239)||(32599347-32599430)
chr2 (156-238)||(36709291-36709373)
chr2 (157-238)||(42061331-42061412)
chr2 (154-238)||(40095261-40095345)
chr2 (156-238)||(3121610-3121692)
chr2 (156-238)||(23860264-23860346)
chr2 (156-238)||(33555463-33555545)
chr2 (156-226)||(14242627-14242697)
chr2 (155-213)||(14945861-14945919)
chr2 (156-238)||(17823579-17823661)
chr2 (156-238)||(24475801-24475883)
chr2 (156-238)||(33299979-33300061)
chr2 (156-233)||(4434695-4434772)
chr2 (155-236)||(5562935-5563016)
chr2 (156-226)||(25333144-25333214)
[»] chr5 (10 HSPs)
chr5 (156-238)||(13988247-13988329)
chr5 (156-238)||(36890377-36890459)
chr5 (156-238)||(15285329-15285411)
chr5 (153-238)||(11247189-11247274)
chr5 (156-239)||(35905994-35906077)
chr5 (158-239)||(12248275-12248356)
chr5 (158-236)||(43100310-43100388)
chr5 (159-221)||(1447864-1447926)
chr5 (156-221)||(20151384-20151449)
chr5 (156-212)||(8378344-8378400)
[»] chr4 (24 HSPs)
chr4 (156-238)||(37605791-37605873)
chr4 (156-238)||(55281208-55281290)
chr4 (155-235)||(17044002-17044082)
chr4 (156-239)||(43749092-43749175)
chr4 (157-235)||(25164574-25164652)
chr4 (156-236)||(45995996-45996076)
chr4 (155-238)||(5817480-5817563)
chr4 (159-236)||(3287087-3287164)
chr4 (159-235)||(51579323-51579399)
chr4 (156-238)||(42179237-42179319)
chr4 (156-238)||(50498210-50498292)
chr4 (155-235)||(20107109-20107190)
chr4 (157-221)||(32290215-32290279)
chr4 (154-235)||(24059236-24059317)
chr4 (153-233)||(51579578-51579657)
chr4 (156-215)||(32525145-32525204)
chr4 (155-205)||(39631271-39631321)
chr4 (155-238)||(22364561-22364644)
chr4 (156-221)||(25784025-25784090)
chr4 (161-238)||(41277220-41277297)
chr4 (162-238)||(26720001-26720077)
chr4 (160-237)||(36851231-36851308)
chr4 (158-239)||(48525328-48525409)
chr4 (156-190)||(14786853-14786887)
[»] chr6 (9 HSPs)
chr6 (155-235)||(14314089-14314169)
chr6 (156-237)||(9045833-9045914)
chr6 (156-236)||(34792753-34792833)
chr6 (159-238)||(1244656-1244735)
chr6 (156-238)||(23915972-23916054)
chr6 (155-212)||(9521943-9522000)
chr6 (162-228)||(29429590-29429656)
chr6 (157-210)||(16717991-16718044)
chr6 (162-235)||(12748217-12748290)
[»] chr8 (19 HSPs)
chr8 (153-236)||(1993742-1993825)
chr8 (156-238)||(14342288-14342371)
chr8 (157-238)||(43066004-43066085)
chr8 (155-238)||(28897994-28898077)
chr8 (156-238)||(2599531-2599613)
chr8 (155-238)||(45413638-45413721)
chr8 (156-238)||(4077061-4077143)
chr8 (164-238)||(8368471-8368545)
chr8 (156-238)||(10391405-10391487)
chr8 (158-239)||(11904855-11904936)
chr8 (161-238)||(41075697-41075774)
chr8 (161-238)||(31774729-31774806)
chr8 (161-227)||(16465723-16465789)
chr8 (159-239)||(35200559-35200639)
chr8 (158-221)||(12142083-12142146)
chr8 (157-215)||(27497174-27497231)
chr8 (177-215)||(7313527-7313565)
chr8 (155-236)||(45502661-45502742)
chr8 (157-209)||(44081068-44081120)
[»] chr1 (23 HSPs)
chr1 (155-238)||(44797566-44797649)
chr1 (155-237)||(1994952-1995034)
chr1 (155-235)||(27325731-27325811)
chr1 (160-237)||(29637311-29637388)
chr1 (155-235)||(1673368-1673448)
chr1 (156-238)||(526999-527081)
chr1 (153-237)||(32267566-32267650)
chr1 (156-238)||(2403025-2403107)
chr1 (156-238)||(39858347-39858429)
chr1 (156-238)||(46845756-46845838)
chr1 (157-235)||(13276567-13276645)
chr1 (155-238)||(6487727-6487810)
chr1 (153-236)||(7178213-7178296)
chr1 (158-238)||(26040972-26041052)
chr1 (156-228)||(49430574-49430646)
chr1 (159-221)||(15225108-15225170)
chr1 (156-208)||(40030838-40030890)
chr1 (159-238)||(40314095-40314174)
chr1 (162-239)||(29731194-29731271)
chr1 (156-221)||(40294848-40294913)
chr1 (158-239)||(47571662-47571743)
chr1 (158-221)||(33502641-33502704)
chr1 (162-239)||(48489455-48489532)
[»] chr7 (14 HSPs)
chr7 (154-235)||(46576345-46576426)
chr7 (153-230)||(48460656-48460733)
chr7 (153-238)||(33496496-33496581)
chr7 (155-227)||(31741042-31741114)
chr7 (158-226)||(42974490-42974558)
chr7 (155-238)||(30922810-30922893)
chr7 (155-238)||(38754995-38755078)
chr7 (158-239)||(28713679-28713760)
chr7 (156-237)||(51938-52019)
chr7 (158-239)||(38349558-38349639)
chr7 (156-228)||(47480123-47480194)
chr7 (163-226)||(11752604-11752667)
chr7 (160-226)||(43068765-43068831)
chr7 (158-239)||(37536414-37536495)
[»] scaffold0533 (1 HSPs)
scaffold0533 (156-237)||(10332-10413)
[»] scaffold0933 (1 HSPs)
scaffold0933 (161-239)||(3152-3231)
[»] scaffold0005 (1 HSPs)
scaffold0005 (156-190)||(52843-52877)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 51673048 - 51673137
Alignment:
Q  62 agatgagatgagatgacccaccattcaattccaacaattttgcgtacgaggggttaatgaatgttgagcacggaacgatacacattaaat 151  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51673048 agatgagatgagatgacccaccattccattccaacaattttgcgtacgaggggttaatgaatgttgagcacggaacgatacacattaaat 51673137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 50989203 - 50989285
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50989203 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccc 50989285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 51092335 - 51092417
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51092335 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccc 51092417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 38247801 - 38247877
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38247801 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 38247877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 9271110 - 9271193
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  9271110 gagtagtgatacatagaccaccttagatggcatgtaccacttgtacacccacacataattttgacaagtgtccttgtggtccct 9271193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 12224184 - 12224103
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  12224184 agtagtgatacataaaccaccttaggtggcatgtaccatttgtacacccacacacaattttgacaagtgtccttgtggtccc 12224103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 8496703 - 8496788
Alignment:
Q  153 tttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||    
T  8496703 tttgagtattgatacatagaccaccttaggtggcatgtaccacttgtccacccacatacaattttgacaagtgtctttgtggtccc 8496788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 48034992 - 48034909
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  48034992 tgagtggtgatacataaaccaccttaggtgacatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtccc 48034909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 23004757 - 23004838
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || | | |||||||||    
T  23004757 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtattcatgtggtccc 23004838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 33288136 - 33288213
Alignment:
Q  160 agtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtcc 237  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| | |||||  ||||||||    
T  33288136 agtgatacatagaccaccttaggtggtatgtaccacttgtacacccacacacaattgtgatatgtgtctatgtggtcc 33288213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 8330774 - 8330692
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||  ||||||||||| ||| |  ||||| |||||||||    
T  8330774 gagtagtgatacatagaccaccttagatggcatgtaccacttgtacattcacacacaattgtgatatatgtccatgtggtccc 8330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 29915141 - 29915090
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccac 207  Q
    ||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  29915141 gagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29915090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 29964294 - 29964243
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccac 207  Q
    ||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  29964294 gagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29964243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 39947333 - 39947262
Alignment:
Q  162 tgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtg 233  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||| ||| | |||||| ||||    
T  39947333 tgatatatagaccaccttaagtgacatgtaccacttatacacccacatacaattgtgatatgtgtccatgtg 39947262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 54713532 - 54713596
Alignment:
Q  164 atacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtcc 228  Q
    ||||||||||||| ||||||||||||||||||||  ||| ||||||| |||| ||||| ||||||    
T  54713532 atacatagaccacgttaggtggcatgtaccacttgaacatccacacataattatgacatgtgtcc 54713596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 36674699 - 36674624
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtg 233  Q
    ||||||||||||| ||||||||||||| ||| |||||||| ||||| |||| | |||| ||||| |||||| ||||    
T  36674699 gtagtgatacataaaccaccttaggtgacatataccacttgtacactcacatataattgtgacatgtgtccatgtg 36674624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 51672826 - 51672856
Alignment:
Q  15 atacttattctaacaagacgcacactattaa 45  Q
    |||||||||||||||||||||||||||||||    
T  51672826 atacttattctaacaagacgcacactattaa 51672856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 46135531 - 46135599
Alignment:
Q  160 agtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtcc 228  Q
    |||||||||||||||| ||||  ||||||||| || || |||||| ||| |||||| ||||| ||||||    
T  46135531 agtgatacatagaccatcttaaatggcatgtatcatttgtacacctacatacaattgtgacatgtgtcc 46135599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 36272840 - 36272761
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36272840 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 36272761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 13697146 - 13697068
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13697146 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 13697068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 32599430 - 32599347
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  32599430 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacataattttgacaagtgtccttgtggtccct 32599347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 36709373 - 36709291
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  36709373 gagtactgatacatagaccatcttaggtggtatgtaccacttatacacccacacacaattttgacaaatgtcattgtggtccc 36709291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 42061412 - 42061331
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||| ||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  42061412 agtagtgatacatagagcactttgggtggcatgtaccacttgtacacccacatacaattttgacaagtgtccttgtggtccc 42061331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 40095261 - 40095345
Alignment:
Q  154 ttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||| ||||| |||||||||||||||||| ||||||||||    
T  40095261 ttgagtagtgatacatagaccaccttagatgacatgtaccacttgtacatccacatacaattttgacaagtgtcattgtggtccc 40095345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 3121610 - 3121692
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| |||||| |||||||||    
T  3121610 gagtagtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtccc 3121692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 23860346 - 23860264
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||| |||||| ||||    
T  23860346 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtatactcacacactattttgacaagtgttcttgtgatccc 23860264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 33555545 - 33555463
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |||||  |||||||||||||||||||||| ||||||||||    
T  33555545 gagtagtgatacatagatcaccttaagtggcatgtaccacttgtacacttacacacaattttgacaagtgtcattgtggtccc 33555463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 14242697 - 14242627
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgt 226  Q
    |||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  14242697 gagtagtgatacatagaccatcttaggtggtatgtaccacctgtacacccacacacaattttgacaagtgt 14242627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 14945919 - 14945861
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14945919 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaa 14945861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 17823579 - 17823661
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||| |||||||||| |||||||||| ||||||||||||||||||    
T  17823579 gagtagtgatacataaaccaccttagatggtatgtatcacttgtacacccacatacaattttgataagtgtccttgtggtccc 17823661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 24475883 - 24475801
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||| ||| |||||    
T  24475883 gagtaatgatacatagaccaccttaggtggtatgtatcacttatacacccatacacaattgtgacatgtgtccatgtagtccc 24475801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 33299979 - 33300061
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||| | |||||| ||||| |||| | |||||||||    
T  33299979 gagtagtgatacatagaccaccttaagtggcatgtaccatttatacacccatatacaattgtgacatgtgttcatgtggtccc 33300061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 4434772 - 4434695
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtg 233  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||  |||||||| ||| ||||| |||||| ||||    
T  4434772 gagtagtgatatatagaccaccttatgtggcatgtaccacttgtacttccacacactattgtgacatgtgtccatgtg 4434695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 5562935 - 5563016
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 236  Q
    ||||||||||||||||||| |  ||||||||||||||||| |||||||  || | | |||||||||| |||||  |||||||    
T  5562935 tgagtagtgatacatagactattttaggtggcatgtaccatttatacattcatatataattttgacatgtgtcgatgtggtc 5563016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 25333144 - 25333214
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgt 226  Q
    ||||||| |||||||||||||||| | | ||||||||||||| |||| | ||||||| || ||||| ||||    
T  25333144 gagtagttatacatagaccaccttggatcgcatgtaccacttgtacatcaacacacatttgtgacatgtgt 25333214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 13988247 - 13988329
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13988247 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccc 13988329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 36890377 - 36890459
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36890377 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccc 36890459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 15285329 - 15285411
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| |||||| |||||||||    
T  15285329 gagtagtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccatgtggtccc 15285411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 11247189 - 11247274
Alignment:
Q  153 tttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||| ||||||| |||||| ||| |||| |||| ||||||||||||||||||| |||| ||||| ||||    
T  11247189 tttgagtagtgatacatagactaccttagatggcatatactacttgtacatccacacacaattttgacaaatgtctttgtgatccc 11247274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 35905994 - 35906077
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||||| | |||||| ||||| |||||| ||| ||||||    
T  35905994 gagtaatgatacatagaccaccttaggtggtatgtatcacttatacacccatatacaattgtgacatgtgtccatgtagtccct 35906077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 12248275 - 12248356
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||| ||||| | |||| ||||| |||||| ||||||||||    
T  12248275 gtagtgatacataaatcaccttaggtggcatataccacttgtacatccacatataattgtgacatgtgtccatgtggtccct 12248356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 43100388 - 43100310
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 236  Q
    ||||||||||||| |||| ||||||||| || |||||||| |||||||||| | |||| ||||| |||||| |||||||    
T  43100388 gtagtgatacataaaccatcttaggtggtatataccacttgtacacccacatataattgtgacatgtgtccatgtggtc 43100310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 1447926 - 1447864
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgaca 221  Q
    |||| ||| |||||| || ||||||||||||||||||||||||| |||| ||||||| |||||    
T  1447926 tagttatatatagacaactttaggtggcatgtaccacttatacatccacgcacaattgtgaca 1447864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 20151384 - 20151449
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgaca 221  Q
    ||||| ||||||||||||||| |||||| |||| ||||||||  ||||||||||| |||| |||||    
T  20151384 gagtaatgatacatagaccactttaggtagcatataccacttgaacacccacacataattatgaca 20151449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 8378344 - 8378400
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacaca 212  Q
    |||| ||||||||||||||||||||| || ||||||||| || |||| |||||||||    
T  8378344 gagtggtgatacatagaccaccttagatgacatgtaccatttgtacatccacacaca 8378400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 37605873 - 37605791
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37605873 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccc 37605791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 55281208 - 55281290
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55281208 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtccc 55281290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 17044002 - 17044082
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17044002 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 17044082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 43749092 - 43749175
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  43749092 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacataattttgacaagtgtccttgtggtccct 43749175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 25164652 - 25164574
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25164652 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 25164574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 45996076 - 45995996
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 236  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  45996076 gagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgttcttgtggtc 45995996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 5817563 - 5817480
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  5817563 tgagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccatgtggtccc 5817480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 3287087 - 3287164
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 236  Q
    |||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  3287087 tagtgatacataaaccaccttagatggtatgtaccacttgtacacccacacacaattttgacaagagtccttgtggtc 3287164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 51579323 - 51579399
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||||| ||||||    
T  51579323 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccatgtggt 51579399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 42179319 - 42179237
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||  ||||||| ||||| |||||| |||||||||    
T  42179319 gagtaatgatacatagaccaccttaggtggtatgtaccacttatacacccatgcacaattgtgacatgtgtccatgtggtccc 42179237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 50498210 - 50498292
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  50498210 gagtagtgatacatagatcaccttaggtagtatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccc 50498292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 20107109 - 20107190
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttataca-cccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||| |||||| ||||||    
T  20107109 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacaccccgcacacaattgtgacatgtgtccatgtggt 20107190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 32290215 - 32290279
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgaca 221  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||    
T  32290215 agtagtgatacatagaccatcttaggtggcatgtaccacttatacacccatacacaattgtgaca 32290279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 24059317 - 24059236
Alignment:
Q  154 ttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    |||||||||||||||||||||||||||| ||||||||| || || |||||||||| |||||| ||||| |||||| ||||||    
T  24059317 ttgagtagtgatacatagaccaccttagatggcatgtatcatttgtacacccacatacaattgtgacatgtgtccatgtggt 24059236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 51579578 - 51579657
Alignment:
Q  153 tttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtg 233  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| ||||| |||||| ||||    
T  51579578 tttgagtagtgataca-agaccaccttaggtggcatgtaccacttgtacacccaaatacaattgtgacatgtgtccatgtg 51579657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 32525204 - 32525145
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaatt 215  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  32525204 gagtagtgatacatagaccatcttaggtggcatataccacttatacatccacacacaatt 32525145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 39631321 - 39631271
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacaccc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39631321 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacaccc 39631271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 22364644 - 22364561
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||| | || |||||||||||| ||||||||||||||||| | |||||| ||| | |||||| |||||||||    
T  22364644 tgagtagtgatacataaatcaacttaggtggcatataccacttatacacccatatacaattgtgatatgtgtccatgtggtccc 22364561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 25784090 - 25784025
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgaca 221  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| |||| |||||    
T  25784090 gagtagtgatacatagatcatcttaggtggcatgtaccacttgtacatccacacataattgtgaca 25784025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 41277220 - 41277297
Alignment:
Q  161 gtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||| ||||||||||| |||||||||| | |||||||||| |||||| ||||| |||| | |||||||||    
T  41277220 gtgatacatagatcaccttaggtgacatgtaccacctgtacacccacatacaattgtgacatgtgttcatgtggtccc 41277297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 26720077 - 26720001
Alignment:
Q  162 tgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||  ||||| | ||| ||||| ||||||||||    
T  26720077 tgatacataaaccaccttaggtggcgtgtaccacttctacacccacattcaattgtaacatgtgtctttgtggtccc 26720001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 36851231 - 36851308
Alignment:
Q  160 agtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtcc 237  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||||| ||  ||| ||||| |||||| ||| ||||    
T  36851231 agtgatgcatagaccaccttaagtggcatgtaccacttgtacacccacgcatgattgtgacatgtgtccatgtagtcc 36851308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 48525328 - 48525409
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||||||| ||||| ||||||||||| |||||||| |||| ||||| | |||| ||||| |||| | |||| |||||    
T  48525328 gtagtgatacataaaccactttaggtggcatataccacttgtacatccacatataattgtgacatgtgttcatgtgttccct 48525409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 14786887 - 14786853
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgt 190  Q
    ||||||||||||||||||||||||||||| |||||    
T  14786887 gagtagtgatacatagaccaccttaggtgacatgt 14786853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 14314169 - 14314089
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14314169 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggt 14314089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 9045833 - 9045914
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtcc 237  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  9045833 gagtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaattttgacaagtgttcttgtggtcc 9045914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 34792833 - 34792753
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 236  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||    
T  34792833 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatataattttgacaagtgtccttgtggtc 34792753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 1244735 - 1244656
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  1244735 tagtgatacatagaccaccttaagtggcatgtaccacttgtacatccacacacaattttggcaagtgtccttgtggtccc 1244656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 23915972 - 23916054
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  23915972 gagtagtgatacatagatcaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccc 23916054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 9522000 - 9521943
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacaca 212  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9522000 tgagtagtaatacatagatcaccttaggtggcatgtaccacttgtacacccacacaca 9521943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 29429590 - 29429656
Alignment:
Q  162 tgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtcc 228  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||    
T  29429590 tgatacacagactaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtcc 29429656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 16717991 - 16718044
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacaca 210  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  16717991 agtagtgatacataaaccaccttaggtggcatataccacttgtacacccacaca 16718044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 12748217 - 12748290
Alignment:
Q  162 tgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||| ||||| ||||||||||| |||||||| |||||||||| | |||| |||||  ||||| ||||||    
T  12748217 tgatacataaaccactttaggtggcatataccacttgtacacccacatataattgtgacatctgtccatgtggt 12748290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 1993825 - 1993742
Alignment:
Q  153 tttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 236  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  1993825 tttgagtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaattttgacaagtgtccttgtggtc 1993742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 14342371 - 14342288
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaa-ttttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14342371 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaatttttgacaagtgtccttgtggtccc 14342288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 43066085 - 43066004
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  43066085 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacacaattttgacaagtgtccttgtggtccc 43066004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 28897994 - 28898077
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  28897994 tgagtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtccc 28898077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 2599531 - 2599613
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| | |||||||||    
T  2599531 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgttcatgtggtccc 2599613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 45413721 - 45413638
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||| | |||||||    
T  45413721 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatatggtccc 45413638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 4077143 - 4077061
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| ||||| |||||| |||||||||||    
T  4077143 gagtagtgatatatagaccaccttaggtggcatgtaccacttgtatacccacacacaactttgataagtgttcttgtggtccc 4077061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 8368545 - 8368471
Alignment:
Q  164 atacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||  ||||||||    
T  8368545 atacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccacgtggtccc 8368471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 10391487 - 10391405
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||| ||||||||||| || |||||||||||||| ||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  10391487 gagtaatgatacatagatcatcttaggtggcatgtgccacttatacacccatacacaattgtgacatgtgtccatgtggtccc 10391405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 11904855 - 11904936
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||| | |||| ||||| |||||| ||||||||||    
T  11904855 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtggtccct 11904936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 41075774 - 41075697
Alignment:
Q  161 gtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| |||||| ||||| |||| | |||||||||    
T  41075774 gtgatacatagaccaccttaggtgacatgtaccacttgtacacccacatacaattgtgacatgtgttcatgtggtccc 41075697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 31774729 - 31774806
Alignment:
Q  161 gtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||| |||||||||||| ||||| |||| |||||| ||||| |||| | |||||||||    
T  31774729 gtgatacatagaccaccttaggtgacatgtaccacttgtacactcacatacaattgtgacatgtgttcatgtggtccc 31774806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 16465789 - 16465723
Alignment:
Q  161 gtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtc 227  Q
    |||||||||||||||||||||  |||||||||||||| || ||||||| |||||| ||||| |||||    
T  16465789 gtgatacatagaccaccttagacggcatgtaccacttgtatacccacatacaattgtgacatgtgtc 16465723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 35200559 - 35200639
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    |||||||||||| ||||||||||||||||| ||  |||| |||||||||| | |||| ||||| |||||| || |||||||    
T  35200559 tagtgatacataaaccaccttaggtggcatatattacttgtacacccacatataattgtgacatgtgtccatgcggtccct 35200639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 12142083 - 12142146
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgaca 221  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||| ||||| | |||| |||||    
T  12142083 gtagtgatacataaaccaccttaggtggcatataccacttgtacatccacatataattgtgaca 12142146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 27497174 - 27497231
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaatt 215  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||| ||||| ||||||    
T  27497174 agtagtgataca-agaccactttaggtggcatgtaccacttgtacatccacagacaatt 27497231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 7313527 - 7313565
Alignment:
Q  177 cttaggtggcatgtaccacttatacacccacacacaatt 215  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  7313527 cttaggtgacatgtaccactgatacacccacacacaatt 7313565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 45502661 - 45502742
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 236  Q
    ||||| || ||||||| ||||||||| |||| ||||||||||| ||||  || | |||||| ||||| |||||| |||||||    
T  45502661 tgagtggttatacataaaccaccttaagtggtatgtaccacttgtacattcatatacaattgtgacatgtgtccatgtggtc 45502742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 44081068 - 44081120
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacac 209  Q
    |||||||||||||| |||||||||| ||||||||| || || |||| ||||||    
T  44081068 agtagtgatacatacaccaccttagatggcatgtatcatttgtacatccacac 44081120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 44797649 - 44797566
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  44797649 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggtccc 44797566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 1994952 - 1995034
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtcc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  1994952 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtctttgtggtcc 1995034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 27325811 - 27325731
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  27325811 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggt 27325731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 29637388 - 29637311
Alignment:
Q  160 agtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtcc 237  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29637388 agtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtccttgtggtcc 29637311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 1673368 - 1673448
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  1673368 tgagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattttgataagtgtccttgtggt 1673448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 527081 - 526999
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  527081 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccc 526999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 32267650 - 32267566
Alignment:
Q  153 tttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtcc 237  Q
    ||||||||||||||||||||||| |||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||    
T  32267650 tttgagtagtgatacatagaccatcttaagtggcatgtacaatttgtacacccacacacaattttgacaagtgtccttgtggtcc 32267566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 2403107 - 2403025
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||    
T  2403107 gagtagtgatacatagaccatcttagatggcatgtaccacttgtacacccacacacaattttgaaaagtgttcttgtggtccc 2403025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 39858347 - 39858429
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  39858347 gagtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccatgtggtccc 39858429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 46845838 - 46845756
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  46845838 gagtagtgatacatagaccaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccatgtggtccc 46845756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 13276645 - 13276567
Alignment:
Q  157 agtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||| ||||||    
T  13276645 agtagtgatacatagaccaccttaggtggtatgtaccacttatacactcatacacaattatgacatgtgtccatgtggt 13276567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 6487727 - 6487810
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||||||  |||||||||||||||||||| |||| |||||||||||| ||||| ||||||  ||||||||    
T  6487727 tgagtagtgatacatagaccaatttaggtggcatgtaccacttgtacatccacacacaattgtgacatgtgtccacgtggtccc 6487810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 7178296 - 7178213
Alignment:
Q  153 tttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtc 236  Q
    |||| ||||||||||||||||||||||||||| ||||||||| || |||||||||| |||||| |||||||||||  |||||||    
T  7178296 tttgggtagtgatacatagaccaccttaggtgacatgtaccatttgtacacccacatacaattgtgacaagtgtctatgtggtc 7178213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 26040972 - 26041052
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||  ||||||||    
T  26040972 gtagtgatacacaaaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacgtggtccc 26041052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 49430646 - 49430574
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtcc 228  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||| ||||||    
T  49430646 gagtggtgatacatagaccaccttaggtggcatgtaccacttatacatcaatacacaattgtgacatgtgtcc 49430574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 15225170 - 15225108
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgaca 221  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| |||||    
T  15225170 tagtgatacatagaccaccttaggtggcatgtacaacttatacacccacatgcaattgtgaca 15225108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 40030838 - 40030890
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccaca 208  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  40030838 gagtagtgatacatagaccaccttaggtagcatgtaccacttgtacacccaca 40030890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 40314095 - 40314174
Alignment:
Q  159 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||| |||||||||||| | |||||||| ||||||| ||| |||||||| ||||| |||||| |||||||||    
T  40314095 tagtgatacataaaccaccttaggtagtatgtaccatttatacatccatacacaattgtgacatgtgtccatgtggtccc 40314174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 29731194 - 29731271
Alignment:
Q  162 tgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||| ||||||||||||||||| |||||||  |||||||||| | |||| ||||| |||||| ||||||||||    
T  29731194 tgatacataaaccaccttaggtggcatataccactagtacacccacatataattgtgacatgtgtccatgtggtccct 29731271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 40294913 - 40294848
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgaca 221  Q
    ||||||||||||||||||||| |||||||||| ||||||||| | |||| | |||||||| |||||    
T  40294913 gagtagtgatacatagaccactttaggtggcacgtaccacttgtccacctatacacaattgtgaca 40294848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 47571743 - 47571662
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||| ||| ||||||||||||| ||| | |||||| |||||||||| | |||| ||||| |||||| ||||||||||    
T  47571743 gtagtgatatataaaccaccttaggtgacatatgccacttgtacacccacatataattgtgacatgtgtccatgtggtccct 47571662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 33502704 - 33502641
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgaca 221  Q
    ||||||||||||||||||| |||| || |||||||||||| |||||| |||  ||||| |||||    
T  33502704 gtagtgatacatagaccacattagatgacatgtaccacttgtacacctacatgcaattgtgaca 33502641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 48489455 - 48489532
Alignment:
Q  162 tgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||| | ||||||||||||||| |||||||| |||| ||| | | |||| |||||  ||||| ||||||||||    
T  48489455 tgatacataaatcaccttaggtggcatataccacttgtacatccatatataattgtgacatctgtccatgtggtccct 48489532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 46576426 - 46576345
Alignment:
Q  154 ttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  46576426 ttgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttaacaagtgtccttgtggt 46576345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 48460656 - 48460733
Alignment:
Q  153 tttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtcctt 230  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||||    
T  48460656 tttgagtagtgatacatagaccaccttaggtggcatgtaccatttgtacatccacatacaattttgacaagtgtcctt 48460733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 33496496 - 33496581
Alignment:
Q  153 tttgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| | |||||||||||||||| ||||| ||||    
T  33496496 tttgagtagggatacatagaccaccttaggtgacatgtaccacttgtacacccacatataattttgacaagtgtctttgtgatccc 33496581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 31741042 - 31741114
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtc 227  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  31741042 tgagtaatgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtc 31741114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 42974558 - 42974490
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgt 226  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  42974558 gtagtgatacataaaccaccttaggtggcatgtaccacttatacacccacatacaattgtgacatgtgt 42974490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 30922893 - 30922810
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||||||||||||||| |||||||||||| ||||||||| | ||||  |||||| ||||||||||||||||||||| |||||    
T  30922893 tgagtagtgatacatagatcaccttaggtggtatgtaccacatgtacattcacacataattttgacaagtgtccttgtagtccc 30922810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 38755078 - 38754995
Alignment:
Q  155 tgagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccc 238  Q
    |||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||| |||| ||||| |||||| |||| ||||    
T  38755078 tgagtaatgatacatagaccaccttaggtggcatgtaccacttgaacacccatacataattatgacatgtgtccatgtgatccc 38754995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 28713679 - 28713760
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||| | |||| ||||| |||||| |||| |||||    
T  28713679 gtagtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccct 28713760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 51938 - 52019
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtcc 237  Q
    |||||||||||||||||||||||||||||| |||||| | || |||| | | | |||||||| |||||| ||||||||||||    
T  51938 gagtagtgatacatagaccaccttaggtggtatgtactatttgtacatctatatacaattttaacaagtatccttgtggtcc 52019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 38349639 - 38349558
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||||||||| | |||| ||||| |||||| |||| |||||    
T  38349639 gtagtgatacataaaccatcttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccct 38349558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 47480194 - 47480123
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtcc 228  Q
    ||||| ||||||||||||||||||||||||||||||||| || |||||||| | |||||| ||||| ||||||    
T  47480194 gagtaatgatacatagaccaccttaggtggcatgtaccatttgtacaccca-atacaattgtgacatgtgtcc 47480123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 11752604 - 11752667
Alignment:
Q  163 gatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgt 226  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||| | |||| ||||| ||||    
T  11752604 gatacatagaccaccttaggtggcatgtatcacttgtacacctacatataattgtgacatgtgt 11752667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 43068831 - 43068765
Alignment:
Q  160 agtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgt 226  Q
    ||||||||| | |||||||||||| |||||||||||||| ||  ||||||| |||||||||| ||||    
T  43068831 agtgatacacataccaccttaggtcgcatgtaccacttaaacctccacacataattttgacatgtgt 43068765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 37536495 - 37536414
Alignment:
Q  158 gtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    ||||||||||||| | || |||||||||||| || ||| | |||||||||| | |||| ||||| |||||| || |||||||    
T  37536495 gtagtgatacataaatcatcttaggtggcatatatcacatgtacacccacatataattgtgacatgtgtccatgcggtccct 37536414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 10413 - 10332
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtcc 237  Q
    ||||||| ||||||||||||||||||||| ||||||| |||| || |  |||| | ||||||||||||||||||||||||||    
T  10413 gagtagtaatacatagaccaccttaggtgacatgtactacttgtatattcacatataattttgacaagtgtccttgtggtcc 10332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 3231 - 3152
Alignment:
Q  161 gtgatacata-gaccaccttaggtggcatgtaccacttatacacccacacacaattttgacaagtgtccttgtggtccct 239  Q
    |||||||||| ||||| ||||| || ||||||||| || |||||||||| ||||||||||||||||||||||| ||||||    
T  3231 gtgatacataagaccatcttagatgacatgtaccatttgtacacccacatacaattttgacaagtgtccttgtagtccct 3152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 52843 - 52877
Alignment:
Q  156 gagtagtgatacatagaccaccttaggtggcatgt 190  Q
    ||||||||||||||||||||||||||||| |||||    
T  52843 gagtagtgatacatagaccaccttaggtgacatgt 52877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University