View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8325_low_14 (Length: 260)
Name: NF8325_low_14
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8325_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 39361010 - 39360776
Alignment:
| Q |
19 |
caaagctccataaatctccaaccacatgttcctgaacattattaggtggcatcactgattgtccatcatagtaaatctgataaaacttcatgtaatcctc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39361010 |
caaagctccataaatctccaaccacatgttcctgaacattattaggtggcatcactgattgtccatcatagtaaatctgataaaacttcatgtaatcctc |
39360911 |
T |
|
| Q |
119 |
gtatgccaacaattcatcagacaattcttgtacctcattttttgctaattcagcttcagcttgttcaacaacatgtgtttcttgttctaccactttctct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39360910 |
gtatgccaacaattcatcagacaattcttgtacctcattttttgctaattcagcttcagcttgttcaacaacatgtgtttcttgttctaccactttctct |
39360811 |
T |
|
| Q |
219 |
ttctctttttcatgttcattcacaacaccaccaaa |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39360810 |
ttctctttttcatgttcattcacaacaccaccaaa |
39360776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University