View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8325_low_15 (Length: 242)
Name: NF8325_low_15
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8325_low_15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 25515627 - 25515859
Alignment:
| Q |
10 |
cgcacacacgactttgtttgctgcatatattaaagtggataggatccatgatgctttgatgataattaacaaaatggtggaggctggtctcaaggtggat |
109 |
Q |
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| T |
25515627 |
cgcacacacaactttgtttgctgcatatattaaagtggataggatccatgatgctttgatgataattaacaaaatggtggaggctggtctcaaggtggat |
25515726 |
T |
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| Q |
110 |
tgtatgatgacttgattaagaatggtcaaactcggatcacactttgnnnnnnntaagaacaaagatgaatcatagtgattctgaatccaatcccaaaagg |
209 |
Q |
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| T |
25515727 |
tgtatgatgacttgattaagaatggtcaaactcggatcacactttgaaaaaaataagaacaaagatgaatcatagtgattctgaatccaatcccaaaagg |
25515826 |
T |
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| Q |
210 |
aaagcagtgcatcctaacatttaacagtatgac |
242 |
Q |
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| T |
25515827 |
aaagcagtgcatcctaacatttaacagtatgac |
25515859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 25526710 - 25526597
Alignment:
| Q |
121 |
ttgattaagaatggtcaaactcggatcacactttgnnnnnnntaagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgca |
220 |
Q |
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| T |
25526710 |
ttgattaagaatggtccaactcggatcgaactttgaaa----taagaagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactaca |
25526615 |
T |
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| Q |
221 |
tcctaacatttaacagta |
238 |
Q |
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| T |
25526614 |
tcctaacatttaacagta |
25526597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 25534806 - 25534601
Alignment:
| Q |
34 |
atatattaaagtggataggatccatgatgctttgatgataattaacaaaatggtggaggctggtctcaaggtggattgtatgatgacttgattaagaatg |
133 |
Q |
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| T |
25534806 |
atattttaaactgaataggatcgatgatgcttacatgacttataacaacatgatggagggtggtctcaaggtggttggttcgattacttgattaagaatg |
25534707 |
T |
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| Q |
134 |
gtcaaactcggatcacactttgnnnnnnntaa--gaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacattt |
231 |
Q |
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| T |
25534706 |
gtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatgaatcaaag-gattctgaatccaatcccaaaaggaaagcactacatcctaacattt |
25534608 |
T |
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| Q |
232 |
aacagta |
238 |
Q |
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| T |
25534607 |
aacagta |
25534601 |
T |
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