View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8325_low_16 (Length: 240)
Name: NF8325_low_16
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8325_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 2247750 - 2247676
Alignment:
| Q |
149 |
gagaaagagcaaatttatccaaaacccaaaaatggaaaactattcataccaatcatacccagattcaggagattc |
223 |
Q |
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| T |
2247750 |
gagaaagagcaaatttatccaaaacccaaaaatggaaaactattcataccaatcatacccagattcaggagattc |
2247676 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2247882 - 2247831
Alignment:
| Q |
1 |
tcatatcctctctattctccgagtcatcacaacacaacactctatgcctatg |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2247882 |
tcatatcctctctattctccgagtcatcacaacacaacactctatgcctatg |
2247831 |
T |
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