View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8325_low_17 (Length: 239)
Name: NF8325_low_17
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8325_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25516086 - 25516308
Alignment:
| Q |
1 |
tcattctaagcattataacaaagtaagtttatttgattaggattaaaacgcacaaaaccatggtcaatggtttctgcgtcatcatcagtaatttccaaac |
100 |
Q |
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| T |
25516086 |
tcattctaagcattataacaaagtaagtttatttgattaggattaaaacgcacaaaatcatggtcaatgttttctgcgtcatcatcagtaatttccaaac |
25516185 |
T |
|
| Q |
101 |
ttcatgactatgaatcgaagagtcaattagaaaaacatgtttgcatatgaaaggtacacattcagttacttggtttactttcaaatgcatcgaggttcct |
200 |
Q |
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| T |
25516186 |
ttcatgactatgaatcgaagagtcaattagaaaaacatgtttgcatatgaaaggtacacattcagttacttggtttactttcaaatgcatcgaggttcct |
25516285 |
T |
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| Q |
201 |
aagaacacatccagctactgaac |
223 |
Q |
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| T |
25516286 |
aagaacacatccagctactgaac |
25516308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 25534311 - 25534106
Alignment:
| Q |
17 |
aacaaagtaagtttatttgattaggattaaaacgcacaaaaccatggtcaatggtttctgcgtcatcatcagtaatttccaaacttcatgactatgaatc |
116 |
Q |
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| T |
25534311 |
aacagagtaagtttctttgattaggaataaaacgcacaaaatcacggtcaatggtttctgtgccatcttcaataattgccaatgttcatgactatgaatg |
25534212 |
T |
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| Q |
117 |
gaagagtcaattagaaaaacatgtttgcatatgaaaggtacacattcagttacttggtttactttcaaatgcatcgaggttcctaagaacacatccagct |
216 |
Q |
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| T |
25534211 |
gaagagtcaattagagaaacatagttgcatagaaaaggtacacattcagttacttggtttactttcaaatgcatcgagattcctaagaacacattcagct |
25534112 |
T |
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| Q |
217 |
actgaa |
222 |
Q |
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|||||| |
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| T |
25534111 |
actgaa |
25534106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 25526315 - 25526104
Alignment:
| Q |
11 |
cattataacaaagtaagtttatttgattaggattaaaacgcacaaaaccatggtcaatggtttctgcgtcatcatcagtaatttccaaacttcatgacta |
110 |
Q |
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||||| |||| ||||||||| ||||||||||| |||||||||||||| || ||||||||||||||| |||||| ||||||||| |||| |||||||||| |
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| T |
25526315 |
cattagaacagagtaagtttctttgattaggaataaaacgcacaaaatcagggtcaatggtttctgtgtcatcttcagtaattgccaatgttcatgacta |
25526216 |
T |
|
| Q |
111 |
tgaatcgaagagtcaattagaaaaacatgtttgcatatgaaaggtacacattcagttacttggtttactttcaaatgcatcgaggttcctaagaacacat |
210 |
Q |
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| T |
25526215 |
tgaatggaagagtcaattagagaaacatagctgcatatgaaatgcacacattcagttagtttgtttactttcaaatgcatcgagattcctaagaacacat |
25526116 |
T |
|
| Q |
211 |
ccagctactgaa |
222 |
Q |
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| T |
25526115 |
tcagctactgaa |
25526104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 25540800 - 25540654
Alignment:
| Q |
59 |
catggtcaatggtttctgcgtcatcatcagtaatttccaaacttcatgactatgaatcgaagagtcaattaga-aaaacatgtttgcatatgaaaggtac |
157 |
Q |
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||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||| |||||||||||| | | |||| |||||||||||| |||| |
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| T |
25540800 |
catggtcaatgatttctgtgtcatcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtac |
25540701 |
T |
|
| Q |
158 |
acattcagttacttggtttactttcaaatgcatcgaggttcctaagaacacat |
210 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25540700 |
aca------tacttggtttactttcaaatgcatcgagtttcctaagaacacat |
25540654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 25539637 - 25539539
Alignment:
| Q |
121 |
agtcaattagaaaaacatgtttgcatatgaaaggtacacattcagttacttggtttactttcaaatgcatcgaggttcctaagaacacatccagctact |
219 |
Q |
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||||||||||| |||||| ||| |||||| ||||||||| || | ||||||| ||||| |||||||| | |||||||||||||||||| ||| |||| |
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| T |
25539637 |
agtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttact |
25539539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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