View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8325_low_18 (Length: 221)
Name: NF8325_low_18
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8325_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 36470951 - 36471154
Alignment:
| Q |
1 |
acatttgttgaagaataatacattaagttaagagactagatgtgcattgaattaaagccagataattttaaaggaaaacattttgaaagatctcaactga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36470951 |
acatttgttgaagaataatacattaagttaagagactagatgtgcattgaattaaagccagataattttaaaggaaaacattttgaaagatctcaactga |
36471050 |
T |
|
| Q |
101 |
gtttttacattgagactgacattcttcctgcaaatgtcacatatcacagaaagctgcaagaaatatggttatcaaaatcataaagcaagatgacaatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36471051 |
gtttttacattgagactgacattcttcctgcaaatgtcacatatcacagaaagctgcaagaaatatggttatcaaaatcataaagcaagatgacaatgca |
36471150 |
T |
|
| Q |
201 |
ttat |
204 |
Q |
| |
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|||| |
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| T |
36471151 |
ttat |
36471154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 29389886 - 29389682
Alignment:
| Q |
1 |
acatttgttgaagaataatacattaagttaagagactagatgtgcattgaattaaagccagataattttaaaggaaaacattttgaaagatctcaactga |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29389886 |
acatttgttgaagaataatacattaagctaagagaccagatgtgcattgaattaaagccagatgattttaaaggaaaacattttgaaagatctcaactga |
29389787 |
T |
|
| Q |
101 |
gtttttacattgagactgacattcttcctgcaaatgtcacatatcaca-gaaagctgcaagaaatatggttatcaaaatcataaagcaagatgacaatgc |
199 |
Q |
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| T |
29389786 |
gtatttacattgagactgacattcttcctgcaaatgtcacatatcacatgaaagctgcaagaaatatggttatcaaaatcataatgcaagatgacaatgc |
29389687 |
T |
|
| Q |
200 |
attat |
204 |
Q |
| |
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||||| |
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| T |
29389686 |
attat |
29389682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 21187922 - 21187718
Alignment:
| Q |
1 |
acatttgttgaagaataatacattaagttaagagactagatgtgcattgaattaaagccagataattttaaaggaaaacattttgaaagatctcaactga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
21187922 |
acatttgttgaagaataatacattaagctaagagactagatgtgcattgaattaaagccagataaattcaaaggaaaacattttgaaagatctcaactga |
21187823 |
T |
|
| Q |
101 |
gtttttacattgagactgacattcttcctgcaaatgtcacatatcaca-gaaagctgcaagaaatatggttatcaaaatcataaagcaagatgacaatgc |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21187822 |
gtatttacattgagactgacattcttcctgcaaatgtcacatatcacatgaaagctgcaagaaatatggttatcaaaatcataatgcaagatgacaatgc |
21187723 |
T |
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| Q |
200 |
attat |
204 |
Q |
| |
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||||| |
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|
| T |
21187722 |
attat |
21187718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 32133453 - 32133513
Alignment:
| Q |
143 |
atcacagaaagctgcaagaaatatggttatcaaaatcataaagcaagatgacaatgcatta |
203 |
Q |
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||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||| |
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| T |
32133453 |
atcacagaaagctgcaaataagatggttatcaaaatgataatgcaagatgacaatgcatta |
32133513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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