View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8325_low_4 (Length: 423)
Name: NF8325_low_4
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8325_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 45692495 - 45692102
Alignment:
| Q |
17 |
agtgtgaagcaacaaccggtgggcttgaacaatcaaatgtggtactcgatagcgcccatgctttgctggaaaatgacaaaagagacaacattgagattga |
116 |
Q |
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| T |
45692495 |
agtgtgaagcaacaaccggtgggcttgaacaatcaaatgtggtactcgatagcgcccatgctttgctggaaaatgacaaaagagacaacattgagattga |
45692396 |
T |
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| Q |
117 |
gattgataaatctcatgagtaagcatcagtagatgcatgcatgcatgtgtgcaaatacatgttggttttgatttgaagttaagaagcgtcttattggaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45692395 |
gattgataaatctcatgagtaagcatcagtagatgcatgcatgcatgtgtgcaaatacatgttggttttgatttgaagttaagaagcgtcttattggaac |
45692296 |
T |
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| Q |
217 |
aacttaacgttcagttgtacttgcaggttatgacttatcgcggctaaattaaaagaatacagtctttcagaaatgagtcgaaattctcttgatctcatct |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45692295 |
aacttagcgttcagttgtacttgcaggttatgacttattgcggctaaattaaaagaatacagtctttcagaaatgagtcgaaattctcttgatctcatct |
45692196 |
T |
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| Q |
317 |
ctgcaaggtcagtctagactctacagtacaagaggaaacttaaaagtcattgaggttgggattccaattgttgacttgccaaattgcacaggtt |
410 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45692195 |
ctgcaagttcagtctagactctacagtacaagaggatacttaaaagtcattgaggttgggattccaattgttgacttgccaaattgcacaggtt |
45692102 |
T |
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