View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8325_low_6 (Length: 384)

Name: NF8325_low_6
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8325_low_6
NF8325_low_6
[»] chr3 (8 HSPs)
chr3 (1-368)||(3220391-3220758)
chr3 (21-368)||(3356306-3356653)
chr3 (144-367)||(3309696-3309919)
chr3 (21-347)||(3722404-3722730)
chr3 (166-367)||(3321317-3321518)
chr3 (128-367)||(3201784-3202023)
chr3 (128-367)||(3302992-3303231)
chr3 (200-310)||(3197487-3197597)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 3220391 - 3220758
Alignment:
Q  1 tgaaatgttcatccagttctcctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgggttagctgctataga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3220391 tgaaatgttcatccagttctcctttgtcgaaaacaaatacagcgcgaattcctgagttaccagtactggtcaacacattgtttgggttagctgctataga 3220490  T
Q  101 gaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220491 gaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatc 3220590  T
Q  201 aaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220591 aaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaa 3220690  T
Q  301 cttcctccaatggtcttgtgtgctcattcttaacaaacccttcagccatccattgccgagtaagtctt 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3220691 cttcctccaatggtcttgtgtgctcattcttaacaaacccttcagccatccattgccgagtaattctt 3220758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 3356306 - 3356653
Alignment:
Q  21 cctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgggttagctgctatagagaagcgcctaactgttccgt 120  Q
    ||||| |||||||| |||||||| |||||||| ||||||||||| ||  |||| |||||||| | | | ||| |||||||||||||||||  | ||||      
T  3356306 cctttgtcgaaaactaatacagcacgaattcctgagttaccagtgcttctcaatacattgttggagatggctactatagagaagcgcctagttattccaa 3356405  T
Q  121 ccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatcaaatcatgaacatgacaact 220  Q
    || ||  |||||||| |||| ||||||   |||| ||||| ||| ||||||||| |||| | |||| |||||| |||| ||||||||| || ||||| ||    
T  3356406 ccgtgacttgttcatcacctccatgcactgaatgacaaaaacttaaatctttcatttttttaatgaccacttcacgcaacaaatcatggacttgacatct 3356505  T
Q  221 tttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaacttcctccaatggtcttgtg 320  Q
    ||| |||||||||||||| |||  ||||||||| |||||||||||||| | || ||||| | ||| ||||||||| ||||||||||| ||||||||||||    
T  3356506 tttaactttcccatcaaagccaagtttggaaacctgaaccaaacttctctgtaccaactctatcaagtactcttcagcaacttcctcgaatggtcttgtg 3356605  T
Q  321 tgctcattcttaacaaacccttcagccatccattgccgagtaagtctt 368  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3356606 tgctcattcttaacaaacccttcagccatccattgcctagtaagtctt 3356653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 144 - 367
Target Start/End: Original strand, 3309696 - 3309919
Alignment:
Q  144 tgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccat 243  Q
    ||||| ||||||||||||||| ||||||||| |||||| |||||||| | | ||| ||||||||  || ||||||||||| ||||||||||||||||||     
T  3309696 tgcattaaatggcaaaagcttaaatctttcatttttctaatgatcacctggtgcaacaaatcattgacttgacaacttttgactttcccatcaaaaccaa 3309795  T
Q  244 ctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaacttcctccaatggtcttgtgtgctcattcttaacaaacccttc 343  Q
    || ||||||| |||||||||||||| | || ||||| ||||| ||||||||| |||||||||||||||| | | || | ||||||| |||||||||||||    
T  3309796 ctctggaaacctgaaccaaacttctctgtaccaactctgtcaggtactcttcagcaacttcctccaatgatttagtctcctcattcataacaaacccttc 3309895  T
Q  344 agccatccattgccgagtaagtct 367  Q
    ||||||||||||||||||||||||    
T  3309896 agccatccattgccgagtaagtct 3309919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 21 - 347
Target Start/End: Complemental strand, 3722730 - 3722404
Alignment:
Q  21 cctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgggttagctgctatagagaagcgcctaactgttccgt 120  Q
    ||||| |||||||| ||||||||||||||||| ||||||||| | ||   ||||| |||||| | | | ||| ||||||| |||||||||  | ||||      
T  3722730 cctttgtcgaaaactaatacagcgcgaattcctgagttaccatttcttcgcaacatattgttggagatggctactatagacaagcgcctagttattccaa 3722631  T
Q  121 ccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatcaaatcatgaacatgacaact 220  Q
    |  ||  | |||||| |||||||||||   |||||||||| ||  ||||||||| |||| | || | || ||| | || ||||||||| || ||||| ||    
T  3722630 cagtgactagttcatcaccttcatgcactgaatggcaaaaactaaaatctttcatttttttaataaccatttcacacaacaaatcatggacttgacatct 3722531  T
Q  221 tttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaacttcctccaatggtcttgtg 320  Q
    ||| |||||||||||||| |||  ||||||||| |||||||||||||| | || ||||| | ||| ||||||||| ||||||||||| ||||||||||||    
T  3722530 tttaactttcccatcaaagccaagtttggaaacctgaaccaaacttctctgtaccaactctatcaagtactcttcagcaacttcctcgaatggtcttgtg 3722431  T
Q  321 tgctcattcttaacaaacccttcagcc 347  Q
    |||||||||||||||||||||||||||    
T  3722430 tgctcattcttaacaaacccttcagcc 3722404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 166 - 367
Target Start/End: Original strand, 3321317 - 3321518
Alignment:
Q  166 aatctttcacttttctgatgatcacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaact 265  Q
    ||||||||| |||||| | ||||||||| |||| |||||||||||| ||| |  |||| |  ||||||||||| ||  || ||||||| | |||||||||    
T  3321317 aatctttcatttttctaaggatcacttcacgcaacaaatcatgaacttgaaattttttgatcttcccatcaaagccgactctggaaacattaaccaaact 3321416  T
Q  266 tctatttatcaactttgtcatgtactcttccgcaacttcctccaatggtcttgtgtgctcattcttaacaaacccttcagccatccattgccgagtaagt 365  Q
    ||| | |||||||| ||||| ||||||||| ||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||    
T  3321417 tctttgtatcaactctgtcaggtactcttctgcaacttcctccaatggtcttatctcctcattcttaacaaacccttctgccatccattgccgagtaagt 3321516  T
Q  366 ct 367  Q
    ||    
T  3321517 ct 3321518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 128 - 367
Target Start/End: Complemental strand, 3202023 - 3201784
Alignment:
Q  128 ttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatcaaatcatgaacatgacaacttttcact 227  Q
    |||||||| |||||||||||| ||||||||||||||| |||||| || |||||| | ||||||||| |||| ||||| ||| || |||||||| || | |    
T  3202023 ttgttcatcaccttcatgcattaaatggcaaaagcttaaatcttgcatttttctaaggatcacttcacgcaacaaattatggacttgacaactcttgatt 3201924  T
Q  228 ttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaacttcctccaatggtcttgtgtgctcat 327  Q
    ||||||||||||||| |||||||||| |||| ||||||||| | |||||||| ||||| ||||||||| ||||| | ||||      ||| | | ||||     
T  3201923 ttcccatcaaaaccaactttggaaacatgaatcaaacttctttgtatcaactctgtcaagtactcttcagcaacgttctccggattccttctttcctcac 3201824  T
Q  328 tcttaacaaacccttcagccatccattgccgagtaagtct 367  Q
     | |||||||||||||||||||||||||||||||||||||    
T  3201823 acctaacaaacccttcagccatccattgccgagtaagtct 3201784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 367
Target Start/End: Original strand, 3302992 - 3303231
Alignment:
Q  128 ttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatcaaatcatgaacatgacaacttttcact 227  Q
    |||||||| | |||||||||| ||||| || || |||  |||||||| |||| | ||||||||||| |||| || |||||| || |||||||||   |||    
T  3302992 ttgttcatcatcttcatgcattaaatgacagaaactttgatctttcatttttttaatgatcacttcacgcaacacatcatggacttgacaacttcggact 3303091  T
Q  228 ttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaacttcctccaatggtcttgtgtgctcat 327  Q
    ||||||||||| |||  |   ||| | | |||||||||||| |  || |||| ||||| ||||||||| ||||||||||||||| || ||||   ||| |    
T  3303092 ttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactctgtcaggtactcttcagcaacttcctccaatagttttgtcccctcct 3303191  T
Q  328 tcttaacaaacccttcagccatccattgccgagtaagtct 367  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  3303192 tcttaacaaacccttctgccatccattgccgagtaagtct 3303231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 3197487 - 3197597
Alignment:
Q  200 caaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgca 299  Q
    ||||||||| ||  |||||||||| ||||| |||||||| ||| |  | |||||||||||||||||| ||| ||||| || | ||| ||||||||| |||    
T  3197487 caaatcatggactcgacaacttttgacttttccatcaaagccaacactagaaacttgaaccaaacttgtatatatcagctctttcaagtactcttcagca 3197586  T
Q  300 acttcctccaa 310  Q
    |||||||||||    
T  3197587 acttcctccaa 3197597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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