View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8325_low_7 (Length: 377)

Name: NF8325_low_7
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8325_low_7
NF8325_low_7
[»] chr4 (4 HSPs)
chr4 (13-362)||(54791344-54791693)
chr4 (13-362)||(52284002-52284351)
chr4 (13-362)||(54777453-54777802)
chr4 (13-329)||(799305-799621)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 54791693 - 54791344
Alignment:
Q  13 atacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54791693 atacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaaca 54791594  T
Q  113 atatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataatcatcttcacgtgcaacccatccataaatgt 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54791593 atatctgaaactgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataatcatcttcacgtgcaacccatccataaatgt 54791494  T
Q  213 ctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattcca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54791493 ctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattcca 54791394  T
Q  313 gtcattgttgaagtctactacagcctgattgtcaccatccatgaagaata 362  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54791393 gtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaata 54791344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 52284351 - 52284002
Alignment:
Q  13 atacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaaca 112  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52284351 atacttatattgcattttgttgaggttttcatttgtaatatcaatttcattagccaggttttccacaatgctatttctgctttcagatgcttcttgaaca 52284252  T
Q  113 atatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataatcatcttcacgtgcaacccatccataaatgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52284251 atatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataatcatcttcacgtgcaacccatccataaatgt 52284152  T
Q  213 ctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattcca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52284151 ctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattcca 52284052  T
Q  313 gtcattgttgaagtctactacagcctgattgtcaccatccatgaagaata 362  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52284051 gtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaata 52284002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 54777453 - 54777802
Alignment:
Q  13 atacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaaca 112  Q
    |||||||||| | ||| |||||||||||||||||| ||||||||||||||||| ||||||||||    ||||||||   |||||||||||||||||||||    
T  54777453 atacttataccgaattatgttgaggttttcatttggaatgtcaatttcattggtcaggttttcccgtttgctattttctctttcagatgcttcttgaaca 54777552  T
Q  113 atatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataatcatcttcacgtgcaacccatccataaatgt 212  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54777553 atatccgaaattgttctcagccttcctttgttccgagggtactccccgattggccctccacaattataatcatcttcacgtgcaacccatccataaatgt 54777652  T
Q  213 ctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattcca 312  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54777653 ctgaactggccagcatgtccattgaattccattccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcttgaaaccattcca 54777752  T
Q  313 gtcattgttgaagtctactacagcctgattgtcaccatccatgaagaata 362  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54777753 gtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaata 54777802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 799621 - 799305
Alignment:
Q  13 atacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaaca 112  Q
    |||| |||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||     
T  799621 atacctatactgcatcttgttgagattttcattagtaatatcaatctcatttgccaggttttccacaatgctatttctgctttgagatgcttcttgaact 799522  T
Q  113 atatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataatcatcttcacgtgcaacccatccataaatgt 212  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||   ||||  |||||||||||||||||||||||||||||| || ||||| |    
T  799521 atatctgaaattgtcctcagccttcctttgttgcgaaggtactccccaatcaaccctggacaattataatcatcttcacgtgcaacccaaccgtaaatct 799422  T
Q  213 ctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctcaaattcacttgcattcatgaaaccattcca 312  Q
    |||||||| |||||| |||| | |||||||| ||||| || ||| || ||||||| |||||| |||||||||  |||||||||||||| || ||||||||    
T  799421 ctgaactgtcctgcaagtccatggaattccaatccttttttccacgacgtttagtctcaaagcatttctcaagctcacttgcattcataaacccattcca 799322  T
Q  313 gtcattgttgaagtcta 329  Q
    |||||||||||||||||    
T  799321 gtcattgttgaagtcta 799305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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