View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8325_low_8 (Length: 302)
Name: NF8325_low_8
Description: NF8325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8325_low_8 |
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| [»] scaffold0505 (1 HSPs) |
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Alignment Details
Target: scaffold0505 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0505
Description:
Target: scaffold0505; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 4538 - 4255
Alignment:
| Q |
2 |
tcgtacgtgtctgttcgttttacaagcttattgaatatgcaaattaatatatggttttatgtgtgtatgctatcattttgacagtatgtctttataaatt |
101 |
Q |
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| T |
4538 |
tcgtacgtgtctgttcgttttacaagcttattgaataggcaaattaatatatggttttatgtgtgtctgctatcattttgacagtatgtctttataaatt |
4439 |
T |
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| Q |
102 |
tatattttaatgactaatatattgttttgtaatcgctaattttattttgaattatacttccaatccctaagttccgataagacacaagattaagttttgt |
201 |
Q |
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| T |
4438 |
tatattttaatgactaatatattgttttgtaatccctaattttatttttaattttacttccggtccctaagttccgatatgacacaagattaagttttgt |
4339 |
T |
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| Q |
202 |
ctgcttgtaatttaattcattcaattgttgattttgtcatgatattattttggaattagcataaagtagattttataatatatg |
285 |
Q |
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| T |
4338 |
ctgcttgtaatttaattcattcaattgttgattttgtcatgatattattttggaattagcataaagtagattttataatatatg |
4255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 116 - 285
Target Start/End: Original strand, 25262468 - 25262637
Alignment:
| Q |
116 |
taatatattgttttgtaatcgctaattttattttgaattatacttccaatccctaagttccgataagacacaagattaagttttgtctgcttgtaattta |
215 |
Q |
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| T |
25262468 |
taatatatggttttgtaatcgctaattttattttgaatcatacttccagtccctaagttccgataagacacaagattaagttttgtctgcttgaaattta |
25262567 |
T |
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| Q |
216 |
attcattcaattgttgattttgtcatgatattattttggaattagcataaagtagattttataatatatg |
285 |
Q |
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| T |
25262568 |
attcattcaattgttgattttgtcatgatattattttggaattagcataaagtagattttataatatatg |
25262637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 25262423 - 25262481
Alignment:
| Q |
1 |
ttcgtacgtgtctgttcgttttacaagcttattgaatatgcaaattaatatatggtttt |
59 |
Q |
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| T |
25262423 |
ttcgtacgtgtctgttcgttttacaagcttattgaatatgcaaattaatatatggtttt |
25262481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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