View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8326_high_3 (Length: 214)
Name: NF8326_high_3
Description: NF8326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8326_high_3 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 10231151 - 10231030
Alignment:
| Q |
93 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttttgt |
192 |
Q |
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| T |
10231151 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgt |
10231052 |
T |
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| Q |
193 |
cccaaaactttgcaccagtcct |
214 |
Q |
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| T |
10231051 |
cccaaaactttgcaccagtcct |
10231030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 10239931 - 10239810
Alignment:
| Q |
93 |
tcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttttgt |
192 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239931 |
tcatcaatctcagcactaatactcaacacactcgatgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgt |
10239832 |
T |
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| Q |
193 |
cccaaaactttgcaccagtcct |
214 |
Q |
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| T |
10239831 |
cccaaaactttgcaccagtcct |
10239810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 10254684 - 10254795
Alignment:
| Q |
103 |
cagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
202 |
Q |
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| T |
10254684 |
cagcactactattcaacacattcgacgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
10254783 |
T |
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| Q |
203 |
tgcaccagtcct |
214 |
Q |
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| T |
10254784 |
tgcaccagtcct |
10254795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10231243 - 10231214
Alignment:
| Q |
1 |
ctcatgagacactaagaaccggttcccctg |
30 |
Q |
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| T |
10231243 |
ctcatgagacactaagaaccggttcccctg |
10231214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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