View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8326_low_3 (Length: 250)
Name: NF8326_low_3
Description: NF8326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8326_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 13712532 - 13712665
Alignment:
| Q |
1 |
tgcatctgagataaacttaaaacgtactagaacttaaggactaaattgactagctccttacaatttaagtgagtagaaagatgatacaatgtaataatat |
100 |
Q |
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| T |
13712532 |
tgcatctgagataaacttaaaacatactagaacttaaggactaaattgactagctccttacaatttaagtgagtagaaagatgatacaatgtaataatat |
13712631 |
T |
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| Q |
101 |
attaccgatgctgacaaaggaggatgcatgatta |
134 |
Q |
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| T |
13712632 |
attaccgatgctgacaaaggaggatgcatgatta |
13712665 |
T |
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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 13712852 - 13712951
Alignment:
| Q |
143 |
ttcatgaaatctaatcatatcttcagattgaactgaagatagataaagggttttgagcaaaggaagattaatagaacaatgaaacatagtggcaacacga |
242 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13712852 |
ttcatgaaatctt-tcatatcttcaaattgaactgaagatagataacgggttttgagcaaaggaagattaatagaacaatgaaacatagtggcaacacga |
13712950 |
T |
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