View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8326_low_4 (Length: 239)
Name: NF8326_low_4
Description: NF8326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8326_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41451341 - 41451586
Alignment:
| Q |
1 |
ttcattaaccgttttcaatttattttcataaaacctccaagttagctnnnnnnnnnnnnnnnngtcacgtatataatcttaaagtaacgactaaaaagga |
100 |
Q |
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| T |
41451341 |
ttcattaaccgttttcaatttattttcataaaacctccaagttagcttatatatgtatata--gtcacgtatataatcgtaaagtaacgactaaaaagga |
41451438 |
T |
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| Q |
101 |
aggaatggagtatgaatataagcgaattattaggcttaaaagaaccaaacctatacatg--------attaattaattgattagaca--tctaagcactt |
190 |
Q |
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| T |
41451439 |
aggaatggagtatgaatataagcgaattattaggcttaaaagaaccaaacctatacatgattaattaattaattaattaattagacatctctaagcactt |
41451538 |
T |
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| Q |
191 |
tacacaaagtctataataagccttgaaatggaaaaagtaagtcaagta |
238 |
Q |
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| T |
41451539 |
tacacaaagtctataataagccttgaaatggaaaaagtaagtcaagta |
41451586 |
T |
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