View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8327_low_1 (Length: 427)
Name: NF8327_low_1
Description: NF8327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8327_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 14370787 - 14370920
Alignment:
| Q |
279 |
gcatgtagtgatttggaaataaggaagagaacctgccatgcagattcgatgatgaacggcatagcgagaggataggagagaagttccactgccaagttac |
378 |
Q |
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| T |
14370787 |
gcatgtagtgatttggaaataaggaagagaacctgccatgcagattcgatgatgaacggcatagcgagaggataggagagaagtgccactgccaagttac |
14370886 |
T |
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| Q |
379 |
actgagttccagatcgatacaaacactattttat |
412 |
Q |
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| T |
14370887 |
actgagtttcagatcgatacaaacattattttat |
14370920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 14370611 - 14370697
Alignment:
| Q |
14 |
agataaaaagaaaacaatttcatgcagaaagaaagtcccgaaacatgccaattgaaagtcactgaaatatgtaatcaggtactgcag |
100 |
Q |
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| T |
14370611 |
agataaaaagaaaacaatttcatgcagaaagaaagtcccgaaacatgccaattgaaagtcactgaaatttataatcaggtactgcag |
14370697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 26466294 - 26466378
Alignment:
| Q |
15 |
gataaaaagaaaacaatttcatgcagaaagaaagtcccgaaacatgccaattgaaagtcactgaaatatgtaatcaggtactgca |
99 |
Q |
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| T |
26466294 |
gataaaaagaaaacactttcatgcagaaagaaactccccaaacatgccaattgaaagtcactgaaatttgtgatcaagtactgca |
26466378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 26467008 - 26467061
Alignment:
| Q |
307 |
gaacctgccatgcagattcgatgatgaacggcatagcgagaggataggagagaa |
360 |
Q |
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| T |
26467008 |
gaacctgccaagcagattcgatgatgaacgccatagcgagagcagaggagagaa |
26467061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 26467079 - 26467112
Alignment:
| Q |
364 |
ccactgccaagttacactgagttccagatcgata |
397 |
Q |
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| T |
26467079 |
ccactgccaagtcacactgagttccagatcgata |
26467112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 8353928 - 8354012
Alignment:
| Q |
16 |
ataaaaagaaaacaatttcatgcagaaagaaagtcccgaaacatgccaattgaaagtcactgaaatatgtaatcaggtactgcag |
100 |
Q |
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| T |
8353928 |
ataaaaagaaaacacttttatgcagaaagaaactccccaaacatgccaattgaaagtcactgaaatttgtgatcaagtagtgcag |
8354012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 24846575 - 24846512
Alignment:
| Q |
16 |
ataaaaagaaaacaatttcatgcagaaagaaagtcccgaaacatgccaattgaaagtcactgaa |
79 |
Q |
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| T |
24846575 |
ataaaaagaaaacactttcatgcagaaagaaactccccaaacatgccaactgaaagtcactgaa |
24846512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 15314693 - 15314607
Alignment:
| Q |
14 |
agataaaaagaaaacaatttcatgcagaaagaaagtcccgaaacatgccaattgaaagtcactgaaatatgtaatcaggtactgcag |
100 |
Q |
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| T |
15314693 |
agataagaagaaaacactttcatgtagaaagaaacttcccaagcatgccaattgaaaatcactaaaatgtgtgattaagtactgcag |
15314607 |
T |
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